Pedobacter nutrimenti

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter

Average proteome isoelectric point is 7.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4924 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A318UGF7|A0A318UGF7_9SPHI Acetyltransferase (GNAT) family protein OS=Pedobacter nutrimenti OX=1241337 GN=B0O44_10315 PE=4 SV=1
MM1 pKa = 7.59LSYY4 pKa = 9.78MQIIPPMDD12 pKa = 5.18DD13 pKa = 3.98DD14 pKa = 5.67KK15 pKa = 11.52MDD17 pKa = 3.52GVLFIAALPVFYY29 pKa = 10.08FIIAQTAKK37 pKa = 9.67RR38 pKa = 11.84CHH40 pKa = 6.52DD41 pKa = 4.22RR42 pKa = 11.84GDD44 pKa = 3.81SGWWMIVPLYY54 pKa = 9.51GFWMLFADD62 pKa = 5.49GDD64 pKa = 3.91IGDD67 pKa = 4.57NEE69 pKa = 4.42YY70 pKa = 11.31GPNPKK75 pKa = 10.05GLYY78 pKa = 10.07YY79 pKa = 10.47EE80 pKa = 5.37FEE82 pKa = 4.49DD83 pKa = 4.35HH84 pKa = 6.96NSPSPIDD91 pKa = 3.59QVDD94 pKa = 3.16GDD96 pKa = 3.93GRR98 pKa = 11.84III100 pKa = 4.09

Molecular weight: 11.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A318U6F1|A0A318U6F1_9SPHI Uncharacterized protein OS=Pedobacter nutrimenti OX=1241337 GN=B0O44_11214 PE=4 SV=1
MM1 pKa = 7.78SDD3 pKa = 2.66GHH5 pKa = 6.55LAFMIGLLGSVHH17 pKa = 7.11CIGMCGPLAFAVPSVKK33 pKa = 9.64TGRR36 pKa = 11.84VYY38 pKa = 11.39LFTDD42 pKa = 3.26KK43 pKa = 11.0VLYY46 pKa = 10.12QLGRR50 pKa = 11.84MISYY54 pKa = 10.23SVLGACIGGIGRR66 pKa = 11.84QLWLSGLQQGISVASGLLILAAACSRR92 pKa = 11.84IFKK95 pKa = 10.51LSGVNRR101 pKa = 11.84TPAFLLQPFHH111 pKa = 7.13RR112 pKa = 11.84LLGAALKK119 pKa = 10.51HH120 pKa = 5.82KK121 pKa = 10.31ANHH124 pKa = 6.58LIIGIINGLLPCGFVYY140 pKa = 10.51LALAGAVNTGSIPAASAYY158 pKa = 7.8MFWFGAGTAPLMLLATIGVGFSGKK182 pKa = 7.56VLRR185 pKa = 11.84GRR187 pKa = 11.84INRR190 pKa = 11.84MVPYY194 pKa = 10.93LMLFLGIWFILRR206 pKa = 11.84GMDD209 pKa = 4.23LNIPYY214 pKa = 10.17LSPSKK219 pKa = 10.05PSSGVAEE226 pKa = 4.4CRR228 pKa = 3.51

Molecular weight: 24.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4924

0

4924

1744692

39

5029

354.3

39.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.404 ± 0.037

0.729 ± 0.01

5.031 ± 0.019

5.609 ± 0.039

4.992 ± 0.027

6.888 ± 0.036

1.758 ± 0.018

6.929 ± 0.035

7.387 ± 0.04

10.02 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.255 ± 0.015

5.568 ± 0.036

3.795 ± 0.022

3.991 ± 0.023

3.84 ± 0.024

6.713 ± 0.031

5.574 ± 0.051

6.236 ± 0.028

1.112 ± 0.013

4.17 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski