Thermoplasmatales archaeon Gpl

Taxonomy: cellular organisms; Archaea; Candidatus Thermoplasmatota; Thermoplasmata; Thermoplasmatales; unclassified Thermoplasmatales

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1917 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|T0LVC9|T0LVC9_9ARCH Uncharacterized protein OS=Thermoplasmatales archaeon Gpl OX=261391 GN=AMDU5_GPLC00016G0017 PE=4 SV=1
MM1 pKa = 6.99EE2 pKa = 4.7TEE4 pKa = 4.62CNVCGGSLQVPDD16 pKa = 5.1DD17 pKa = 4.37VIKK20 pKa = 11.21GEE22 pKa = 4.27IVSCPDD28 pKa = 3.08CGVEE32 pKa = 4.13YY33 pKa = 10.06EE34 pKa = 4.21VSEE37 pKa = 4.19IRR39 pKa = 11.84DD40 pKa = 3.7GNPVLRR46 pKa = 11.84AAEE49 pKa = 4.63EE50 pKa = 3.86IRR52 pKa = 11.84EE53 pKa = 4.23DD54 pKa = 3.17WGEE57 pKa = 3.71

Molecular weight: 6.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|T0LVU9|T0LVU9_9ARCH Metallophos domain-containing protein OS=Thermoplasmatales archaeon Gpl OX=261391 GN=AMDU5_GPLC00010G0014 PE=4 SV=1
MM1 pKa = 7.43KK2 pKa = 10.48GIAGRR7 pKa = 11.84QSRR10 pKa = 11.84GLPLGARR17 pKa = 11.84MVCADD22 pKa = 3.43NSGAKK27 pKa = 9.25IVSLINVKK35 pKa = 9.65AWHH38 pKa = 5.66GVARR42 pKa = 11.84RR43 pKa = 11.84VPAAGVGDD51 pKa = 3.8MFIASVKK58 pKa = 10.55KK59 pKa = 10.43GGPDD63 pKa = 3.03VRR65 pKa = 11.84AKK67 pKa = 10.3VVYY70 pKa = 10.31AVVIRR75 pKa = 11.84QKK77 pKa = 10.56RR78 pKa = 11.84PYY80 pKa = 9.65RR81 pKa = 11.84RR82 pKa = 11.84ADD84 pKa = 3.16GSIISFEE91 pKa = 4.09EE92 pKa = 3.73NAAVLVTPDD101 pKa = 3.33GEE103 pKa = 4.6VRR105 pKa = 11.84GSEE108 pKa = 3.61IKK110 pKa = 11.02GPVARR115 pKa = 11.84EE116 pKa = 3.52AAEE119 pKa = 3.75RR120 pKa = 11.84WPRR123 pKa = 11.84IAAIASTIVV132 pKa = 2.82

Molecular weight: 13.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1917

0

1917

536142

22

1911

279.7

31.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.367 ± 0.053

0.694 ± 0.02

5.118 ± 0.053

6.894 ± 0.077

4.877 ± 0.05

6.988 ± 0.051

1.518 ± 0.02

9.116 ± 0.055

7.104 ± 0.069

8.892 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.086 ± 0.033

5.334 ± 0.053

3.543 ± 0.032

2.338 ± 0.027

4.711 ± 0.043

7.944 ± 0.06

5.112 ± 0.043

6.426 ± 0.041

0.866 ± 0.018

4.067 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski