Xenorhabdus szentirmaii DSM 16338

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Morganellaceae; Xenorhabdus; Xenorhabdus szentirmaii

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4565 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W1IWR3|W1IWR3_9GAMM HpaG2 protein OS=Xenorhabdus szentirmaii DSM 16338 OX=1427518 GN=XSR1_260021 PE=4 SV=1
MM1 pKa = 7.49AKK3 pKa = 9.87IGIFVGTVYY12 pKa = 11.17GNALAVAEE20 pKa = 4.42EE21 pKa = 4.12ALQILTQQGHH31 pKa = 4.14QVEE34 pKa = 4.44IFEE37 pKa = 5.48DD38 pKa = 3.43ATLEE42 pKa = 3.84QWQEE46 pKa = 3.75YY47 pKa = 8.39LQDD50 pKa = 3.85VILVVTSTTGNGDD63 pKa = 3.72LPDD66 pKa = 5.15GIEE69 pKa = 4.38PLYY72 pKa = 10.83TDD74 pKa = 5.22LNDD77 pKa = 3.75KK78 pKa = 10.79LGYY81 pKa = 10.2QPDD84 pKa = 3.83LRR86 pKa = 11.84YY87 pKa = 10.94GMIVLGDD94 pKa = 3.54SSYY97 pKa = 11.18DD98 pKa = 3.6TFCGGGRR105 pKa = 11.84AFDD108 pKa = 4.4EE109 pKa = 4.35LLQEE113 pKa = 4.14QGAKK117 pKa = 10.33RR118 pKa = 11.84IGDD121 pKa = 3.8MLLIDD126 pKa = 5.6AIDD129 pKa = 3.59VTEE132 pKa = 4.44PEE134 pKa = 4.75IFAQDD139 pKa = 3.69WIEE142 pKa = 3.92GWGTLLL148 pKa = 4.92

Molecular weight: 16.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W1J3U8|W1J3U8_9GAMM Cell division protein ZapB OS=Xenorhabdus szentirmaii DSM 16338 OX=1427518 GN=zapB PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84NRR14 pKa = 11.84SHH16 pKa = 7.16GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LTVSKK46 pKa = 10.99

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4565

0

4565

1315782

16

4487

288.2

32.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.028 ± 0.038

1.112 ± 0.014

5.169 ± 0.031

6.057 ± 0.036

4.063 ± 0.029

6.813 ± 0.044

2.466 ± 0.022

6.913 ± 0.042

5.262 ± 0.037

10.505 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.626 ± 0.02

4.531 ± 0.033

4.245 ± 0.028

4.568 ± 0.036

5.066 ± 0.034

6.48 ± 0.028

5.272 ± 0.026

6.218 ± 0.03

1.368 ± 0.015

3.238 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski