Congregibacter litoralis KT71

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Halieaceae; Congregibacter; Congregibacter litoralis

Average proteome isoelectric point is 5.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3868 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A4A7D8|A4A7D8_9GAMM Acetolactate synthase large subunit OS=Congregibacter litoralis KT71 OX=314285 GN=KT71_03132 PE=3 SV=1
MM1 pKa = 7.4LTPGKK6 pKa = 9.31VTDD9 pKa = 3.65KK10 pKa = 11.05ALWIAMLGMLTALACAAPRR29 pKa = 11.84ADD31 pKa = 3.54SLYY34 pKa = 10.39VGAGAYY40 pKa = 7.66FTDD43 pKa = 3.66VEE45 pKa = 4.43LSVGGEE51 pKa = 4.04DD52 pKa = 5.66DD53 pKa = 3.21ITPAGFIGYY62 pKa = 8.97QFLDD66 pKa = 3.81SNVLMLSAEE75 pKa = 3.8AGYY78 pKa = 10.97YY79 pKa = 10.37DD80 pKa = 4.21LGAWSGTLDD89 pKa = 3.58DD90 pKa = 3.98VRR92 pKa = 11.84YY93 pKa = 10.28SVDD96 pKa = 3.25ASALTVAGVAYY107 pKa = 10.55VPLGPFFEE115 pKa = 5.22VYY117 pKa = 10.66AKK119 pKa = 10.75AGFAAVEE126 pKa = 4.38VKK128 pKa = 10.67SRR130 pKa = 11.84FADD133 pKa = 3.35IPRR136 pKa = 11.84TDD138 pKa = 4.82DD139 pKa = 3.39DD140 pKa = 4.18TEE142 pKa = 4.22TFIGAGVALDD152 pKa = 4.33FFDD155 pKa = 4.0TVDD158 pKa = 3.53IYY160 pKa = 11.68AEE162 pKa = 3.94YY163 pKa = 10.66LQFDD167 pKa = 3.8NTINSQMVGVGIRR180 pKa = 11.84FDD182 pKa = 3.77FFF184 pKa = 5.35

Molecular weight: 19.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A4A3M6|A4A3M6_9GAMM Cytochrome c-type biogenesis protein OS=Congregibacter litoralis KT71 OX=314285 GN=KT71_16556 PE=3 SV=2
MM1 pKa = 7.68KK2 pKa = 10.34FPFWRR7 pKa = 11.84RR8 pKa = 11.84SLARR12 pKa = 11.84TIFLGVAALGVLLWAASSQLGLGLNSLLAQFLVLMAALLLLIGLAAVVGIILGMLRR68 pKa = 11.84RR69 pKa = 11.84KK70 pKa = 9.64RR71 pKa = 3.56

Molecular weight: 7.69 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3868

0

3868

1301601

29

4182

336.5

36.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.833 ± 0.046

0.97 ± 0.015

6.101 ± 0.037

6.377 ± 0.037

3.723 ± 0.024

7.94 ± 0.037

2.065 ± 0.019

4.935 ± 0.028

3.132 ± 0.03

10.763 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.403 ± 0.018

3.026 ± 0.025

4.698 ± 0.029

3.65 ± 0.026

6.691 ± 0.035

6.476 ± 0.034

5.093 ± 0.041

7.123 ± 0.038

1.364 ± 0.014

2.638 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski