Pigeon adenovirus 1

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Pigeon aviadenovirus A

Average proteome isoelectric point is 6.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 37 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|X5M219|X5M219_9ADEN Protein ORF62 OS=Pigeon adenovirus 1 OX=764030 GN=ORF62 PE=4 SV=1
MM1 pKa = 7.37PQPSNVAVVAPKK13 pKa = 9.49TKK15 pKa = 10.35PEE17 pKa = 3.97APRR20 pKa = 11.84KK21 pKa = 8.71RR22 pKa = 11.84QLSAAALAAEE32 pKa = 4.25QQQAEE37 pKa = 4.02RR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84RR41 pKa = 11.84KK42 pKa = 9.63RR43 pKa = 11.84LRR45 pKa = 11.84RR46 pKa = 11.84DD47 pKa = 3.03ATDD50 pKa = 3.94PDD52 pKa = 4.26LNLVYY57 pKa = 9.81PFWYY61 pKa = 8.98TVEE64 pKa = 4.68DD65 pKa = 3.62PHH67 pKa = 8.45VVNPPFLAPTGPLYY81 pKa = 10.78DD82 pKa = 4.93DD83 pKa = 4.55NGNLNIRR90 pKa = 11.84LTPPVTLVEE99 pKa = 4.82DD100 pKa = 4.59GVGLAYY106 pKa = 10.29DD107 pKa = 3.55QSLKK111 pKa = 10.98VSDD114 pKa = 3.86ATGAAAGVLGVQVDD128 pKa = 3.99TEE130 pKa = 4.56GPLTVTEE137 pKa = 5.51DD138 pKa = 3.84GLDD141 pKa = 3.78LNTDD145 pKa = 3.34DD146 pKa = 5.5SLAVNDD152 pKa = 4.05DD153 pKa = 3.12WQLGVRR159 pKa = 11.84FAEE162 pKa = 4.0NQPFSVTTAGVSLLVDD178 pKa = 3.66DD179 pKa = 4.98TLLIAAADD187 pKa = 3.98EE188 pKa = 4.3EE189 pKa = 5.24TPTSYY194 pKa = 11.23EE195 pKa = 3.98LGVHH199 pKa = 6.84LNQNGPITADD209 pKa = 3.1ADD211 pKa = 4.66GIDD214 pKa = 4.89LEE216 pKa = 4.79VDD218 pKa = 3.21NQTLQVTTNEE228 pKa = 3.85QSQGVLAVKK237 pKa = 10.29LKK239 pKa = 10.02QQGGLSAGTSGIGINYY255 pKa = 9.32DD256 pKa = 3.29NEE258 pKa = 4.16GALVVSDD265 pKa = 3.86NTLQLKK271 pKa = 10.29IGTDD275 pKa = 3.66QPFSTTNGLSLNYY288 pKa = 9.78DD289 pKa = 3.6PNSFTVSGVTTSGTTTTMSQLAVKK313 pKa = 9.75VASSNPLGKK322 pKa = 10.31DD323 pKa = 3.03NSGLKK328 pKa = 10.0LVYY331 pKa = 9.06NTQDD335 pKa = 3.17FFDD338 pKa = 5.5DD339 pKa = 3.81NSSGLSAVTPIQYY352 pKa = 10.5LSPYY356 pKa = 8.05CTYY359 pKa = 10.95SAGSPGLDD367 pKa = 2.94TFDD370 pKa = 3.27VTVRR374 pKa = 11.84SSSGEE379 pKa = 3.66NWTIAAYY386 pKa = 10.14VVIANSGGICNGILYY401 pKa = 9.8LHH403 pKa = 7.09FDD405 pKa = 3.72KK406 pKa = 11.14KK407 pKa = 10.92QLGTLGTGQGGEE419 pKa = 3.95TGNYY423 pKa = 7.95LRR425 pKa = 11.84CAIVVNPSGNPGGNHH440 pKa = 6.48SNFSNPRR447 pKa = 11.84WWPEE451 pKa = 3.37GSNSFLTPPGPPNAPPVNAVVSAIGRR477 pKa = 11.84NNWYY481 pKa = 10.15YY482 pKa = 9.84GPPWRR487 pKa = 11.84GVEE490 pKa = 4.11VKK492 pKa = 10.59LKK494 pKa = 10.62SRR496 pKa = 11.84STNTIGSTTTVTNTDD511 pKa = 2.66AVAYY515 pKa = 6.92YY516 pKa = 10.58LPATAQGSNGNPNVIYY532 pKa = 9.68FIYY535 pKa = 9.99EE536 pKa = 4.13VKK538 pKa = 10.44FDD540 pKa = 3.9WYY542 pKa = 11.35NGTTNNGMGVQTSDD556 pKa = 5.04PIPFSYY562 pKa = 10.36LGSLPQFPRR571 pKa = 11.84NSTGTISTTTTTTTTVITPALLPDD595 pKa = 3.99VVPAPGPEE603 pKa = 4.5PGTLPAPEE611 pKa = 5.38AGEE614 pKa = 4.28TQDD617 pKa = 3.41TAEE620 pKa = 5.17DD621 pKa = 4.51LPHH624 pKa = 6.48QPPEE628 pKa = 4.32DD629 pKa = 3.49PALEE633 pKa = 4.19VEE635 pKa = 4.35PDD637 pKa = 3.39EE638 pKa = 5.87DD639 pKa = 3.65PALEE643 pKa = 4.22VEE645 pKa = 4.46APEE648 pKa = 4.52DD649 pKa = 3.21AAAEE653 pKa = 4.3VPVVDD658 pKa = 5.07DD659 pKa = 3.99AALEE663 pKa = 4.11EE664 pKa = 4.72VPLEE668 pKa = 4.59DD669 pKa = 4.54PSEE672 pKa = 4.28GSPAEE677 pKa = 4.29DD678 pKa = 2.82AALPEE683 pKa = 4.29EE684 pKa = 4.83DD685 pKa = 4.47VAPEE689 pKa = 3.9DD690 pKa = 3.64TSVVDD695 pKa = 4.76EE696 pKa = 5.29LPPPPPQEE704 pKa = 4.28PPAPDD709 pKa = 4.04PEE711 pKa = 4.96PPVTPPAEE719 pKa = 4.17QPSLVIVDD727 pKa = 5.57FVADD731 pKa = 4.28PDD733 pKa = 4.55PYY735 pKa = 11.15LQFPQDD741 pKa = 3.62HH742 pKa = 4.94QHH744 pKa = 6.81DD745 pKa = 4.56RR746 pKa = 11.84IILL749 pKa = 3.88

Molecular weight: 79.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|X5LU16|X5LU16_9ADEN Hexon assembly protein 100K OS=Pigeon adenovirus 1 OX=764030 GN=100K PE=4 SV=1
MM1 pKa = 7.74SILISPSDD9 pKa = 3.46NRR11 pKa = 11.84GWGMRR16 pKa = 11.84RR17 pKa = 11.84RR18 pKa = 11.84PRR20 pKa = 11.84SSMRR24 pKa = 11.84GVGSTGRR31 pKa = 11.84LVLRR35 pKa = 11.84RR36 pKa = 11.84LLGLGTTTSRR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84RR49 pKa = 11.84RR50 pKa = 11.84RR51 pKa = 11.84TRR53 pKa = 11.84RR54 pKa = 11.84VRR56 pKa = 11.84GGAARR61 pKa = 11.84RR62 pKa = 11.84STTSTTRR69 pKa = 11.84VIAVRR74 pKa = 11.84TTRR77 pKa = 11.84RR78 pKa = 11.84RR79 pKa = 11.84RR80 pKa = 11.84RR81 pKa = 11.84RR82 pKa = 3.29

Molecular weight: 9.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

37

0

37

13690

37

1571

370.0

41.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.072 ± 0.509

1.819 ± 0.248

5.398 ± 0.282

5.778 ± 0.393

3.937 ± 0.253

6.275 ± 0.339

2.462 ± 0.253

2.476 ± 0.168

2.345 ± 0.185

9.905 ± 0.432

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.833 ± 0.152

3.492 ± 0.492

7.714 ± 0.458

3.901 ± 0.262

8.787 ± 0.666

6.45 ± 0.297

6.326 ± 0.664

6.896 ± 0.286

1.461 ± 0.153

3.674 ± 0.292
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski