Amino acid dipepetide frequency for Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4) (Fusarium solani subsp. pisi)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
8.663AlaAla: 8.663 ± 0.069
1.189AlaCys: 1.189 ± 0.015
4.194AlaAsp: 4.194 ± 0.025
5.103AlaGlu: 5.103 ± 0.055
3.293AlaPhe: 3.293 ± 0.021
5.72AlaGly: 5.72 ± 0.035
1.732AlaHis: 1.732 ± 0.017
4.507AlaIle: 4.507 ± 0.03
4.123AlaLys: 4.123 ± 0.03
7.82AlaLeu: 7.82 ± 0.035
2.012AlaMet: 2.012 ± 0.018
2.829AlaAsn: 2.829 ± 0.023
4.655AlaPro: 4.655 ± 0.04
3.242AlaGln: 3.242 ± 0.027
4.713AlaArg: 4.713 ± 0.028
6.974AlaSer: 6.974 ± 0.037
5.099AlaThr: 5.099 ± 0.026
5.416AlaVal: 5.416 ± 0.031
1.328AlaTrp: 1.328 ± 0.014
2.189AlaTyr: 2.189 ± 0.017
0.0AlaXaa: 0.0 ± 0.0
Cys
0.976CysAla: 0.976 ± 0.012
0.27CysCys: 0.27 ± 0.007
0.749CysAsp: 0.749 ± 0.011
0.677CysGlu: 0.677 ± 0.011
0.613CysPhe: 0.613 ± 0.01
1.012CysGly: 1.012 ± 0.014
0.374CysHis: 0.374 ± 0.008
0.793CysIle: 0.793 ± 0.012
0.558CysLys: 0.558 ± 0.009
1.376CysLeu: 1.376 ± 0.016
0.278CysMet: 0.278 ± 0.006
0.459CysAsn: 0.459 ± 0.008
0.734CysPro: 0.734 ± 0.013
0.513CysGln: 0.513 ± 0.009
0.85CysArg: 0.85 ± 0.013
1.009CysSer: 1.009 ± 0.015
0.774CysThr: 0.774 ± 0.012
0.879CysVal: 0.879 ± 0.012
0.254CysTrp: 0.254 ± 0.006
0.387CysTyr: 0.387 ± 0.007
0.0CysXaa: 0.0 ± 0.0
Asp
4.782AspAla: 4.782 ± 0.028
0.689AspCys: 0.689 ± 0.01
4.427AspAsp: 4.427 ± 0.039
4.541AspGlu: 4.541 ± 0.035
2.297AspPhe: 2.297 ± 0.018
4.207AspGly: 4.207 ± 0.029
1.276AspHis: 1.276 ± 0.014
3.072AspIle: 3.072 ± 0.021
2.637AspLys: 2.637 ± 0.025
5.209AspLeu: 5.209 ± 0.029
1.352AspMet: 1.352 ± 0.013
1.934AspAsn: 1.934 ± 0.017
3.4AspPro: 3.4 ± 0.022
1.953AspGln: 1.953 ± 0.019
3.006AspArg: 3.006 ± 0.023
4.067AspSer: 4.067 ± 0.03
2.956AspThr: 2.956 ± 0.022
3.726AspVal: 3.726 ± 0.023
0.997AspTrp: 0.997 ± 0.012
1.626AspTyr: 1.626 ± 0.016
0.0AspXaa: 0.0 ± 0.0
Glu
5.638GluAla: 5.638 ± 0.056
0.705GluCys: 0.705 ± 0.01
4.133GluAsp: 4.133 ± 0.026
5.27GluGlu: 5.27 ± 0.062
2.033GluPhe: 2.033 ± 0.017
3.783GluGly: 3.783 ± 0.024
1.417GluHis: 1.417 ± 0.015
2.981GluIle: 2.981 ± 0.022
3.605GluLys: 3.605 ± 0.031
5.245GluLeu: 5.245 ± 0.033
1.5GluMet: 1.5 ± 0.013
2.203GluAsn: 2.203 ± 0.019
3.019GluPro: 3.019 ± 0.029
2.327GluGln: 2.327 ± 0.022
3.746GluArg: 3.746 ± 0.033
4.191GluSer: 4.191 ± 0.026
3.674GluThr: 3.674 ± 0.028
3.647GluVal: 3.647 ± 0.025
0.975GluTrp: 0.975 ± 0.01
1.683GluTyr: 1.683 ± 0.016
0.0GluXaa: 0.0 ± 0.0
Phe
3.109PheAla: 3.109 ± 0.025
0.636PheCys: 0.636 ± 0.008
2.391PheAsp: 2.391 ± 0.02
2.223PheGlu: 2.223 ± 0.021
1.758PhePhe: 1.758 ± 0.021
3.022PheGly: 3.022 ± 0.028
0.96PheHis: 0.96 ± 0.013
1.989PheIle: 1.989 ± 0.018
1.631PheLys: 1.631 ± 0.017
3.65PheLeu: 3.65 ± 0.025
0.862PheMet: 0.862 ± 0.011
1.518PheAsn: 1.518 ± 0.016
2.014PhePro: 2.014 ± 0.017
1.469PheGln: 1.469 ± 0.014
2.019PheArg: 2.019 ± 0.018
3.007PheSer: 3.007 ± 0.022
2.221PheThr: 2.221 ± 0.017
2.514PheVal: 2.514 ± 0.021
0.748PheTrp: 0.748 ± 0.01
1.174PheTyr: 1.174 ± 0.014
0.0PheXaa: 0.0 ± 0.0
Gly
5.257GlyAla: 5.257 ± 0.034
1.002GlyCys: 1.002 ± 0.015
3.736GlyAsp: 3.736 ± 0.025
3.642GlyGlu: 3.642 ± 0.025
3.019GlyPhe: 3.019 ± 0.026
5.552GlyGly: 5.552 ± 0.052
1.761GlyHis: 1.761 ± 0.021
3.751GlyIle: 3.751 ± 0.028
3.479GlyLys: 3.479 ± 0.028
6.364GlyLeu: 6.364 ± 0.03
1.645GlyMet: 1.645 ± 0.016
2.554GlyAsn: 2.554 ± 0.024
3.372GlyPro: 3.372 ± 0.022
2.628GlyGln: 2.628 ± 0.023
4.098GlyArg: 4.098 ± 0.023
5.589GlySer: 5.589 ± 0.031
4.01GlyThr: 4.01 ± 0.024
4.428GlyVal: 4.428 ± 0.031
1.315GlyTrp: 1.315 ± 0.015
2.214GlyTyr: 2.214 ± 0.02
0.0GlyXaa: 0.0 ± 0.0
His
1.77HisAla: 1.77 ± 0.017
0.355HisCys: 0.355 ± 0.007
1.367HisAsp: 1.367 ± 0.016
1.359HisGlu: 1.359 ± 0.013
0.971HisPhe: 0.971 ± 0.013
1.807HisGly: 1.807 ± 0.02
0.875HisHis: 0.875 ± 0.023
1.233HisIle: 1.233 ± 0.013
0.92HisLys: 0.92 ± 0.011
2.367HisLeu: 2.367 ± 0.019
0.506HisMet: 0.506 ± 0.01
0.805HisAsn: 0.805 ± 0.011
1.591HisPro: 1.591 ± 0.016
0.993HisGln: 0.993 ± 0.012
1.53HisArg: 1.53 ± 0.015
1.698HisSer: 1.698 ± 0.015
1.186HisThr: 1.186 ± 0.013
1.507HisVal: 1.507 ± 0.013
0.38HisTrp: 0.38 ± 0.007
0.699HisTyr: 0.699 ± 0.01
0.0HisXaa: 0.0 ± 0.0
Ile
4.213IleAla: 4.213 ± 0.031
0.818IleCys: 0.818 ± 0.012
2.962IleAsp: 2.962 ± 0.022
2.882IleGlu: 2.882 ± 0.021
2.121IlePhe: 2.121 ± 0.018
3.4IleGly: 3.4 ± 0.027
1.206IleHis: 1.206 ± 0.014
2.694IleIle: 2.694 ± 0.023
2.274IleLys: 2.274 ± 0.02
4.7IleLeu: 4.7 ± 0.03
1.096IleMet: 1.096 ± 0.013
1.869IleAsn: 1.869 ± 0.015
3.036IlePro: 3.036 ± 0.021
1.956IleGln: 1.956 ± 0.017
2.838IleArg: 2.838 ± 0.019
3.79IleSer: 3.79 ± 0.023
2.896IleThr: 2.896 ± 0.021
3.257IleVal: 3.257 ± 0.024
0.847IleTrp: 0.847 ± 0.012
1.438IleTyr: 1.438 ± 0.015
0.0IleXaa: 0.0 ± 0.0
Lys
4.343LysAla: 4.343 ± 0.032
0.559LysCys: 0.559 ± 0.01
2.964LysAsp: 2.964 ± 0.024
3.318LysGlu: 3.318 ± 0.031
1.531LysPhe: 1.531 ± 0.015
3.045LysGly: 3.045 ± 0.023
1.167LysHis: 1.167 ± 0.015
2.286LysIle: 2.286 ± 0.018
3.152LysLys: 3.152 ± 0.033
4.158LysLeu: 4.158 ± 0.024
1.045LysMet: 1.045 ± 0.012
1.718LysAsn: 1.718 ± 0.018
2.806LysPro: 2.806 ± 0.024
1.72LysGln: 1.72 ± 0.017
3.186LysArg: 3.186 ± 0.025
3.345LysSer: 3.345 ± 0.023
2.976LysThr: 2.976 ± 0.019
2.9LysVal: 2.9 ± 0.022
0.743LysTrp: 0.743 ± 0.01
1.372LysTyr: 1.372 ± 0.016
0.0LysXaa: 0.0 ± 0.0
Leu
8.012LeuAla: 8.012 ± 0.038
1.335LeuCys: 1.335 ± 0.016
5.395LeuAsp: 5.395 ± 0.031
5.648LeuGlu: 5.648 ± 0.036
3.508LeuPhe: 3.508 ± 0.025
6.274LeuGly: 6.274 ± 0.03
2.202LeuHis: 2.202 ± 0.02
4.151LeuIle: 4.151 ± 0.028
4.198LeuLys: 4.198 ± 0.033
8.373LeuLeu: 8.373 ± 0.048
1.881LeuMet: 1.881 ± 0.016
3.171LeuAsn: 3.171 ± 0.019
5.38LeuPro: 5.38 ± 0.025
3.685LeuGln: 3.685 ± 0.024
5.648LeuArg: 5.648 ± 0.034
7.185LeuSer: 7.185 ± 0.038
4.886LeuThr: 4.886 ± 0.027
5.758LeuVal: 5.758 ± 0.029
1.354LeuTrp: 1.354 ± 0.014
2.41LeuTyr: 2.41 ± 0.02
0.0LeuXaa: 0.0 ± 0.0
Met
2.379MetAla: 2.379 ± 0.015
0.277MetCys: 0.277 ± 0.006
1.29MetAsp: 1.29 ± 0.013
1.272MetGlu: 1.272 ± 0.014
0.782MetPhe: 0.782 ± 0.011
1.554MetGly: 1.554 ± 0.016
0.492MetHis: 0.492 ± 0.008
1.061MetIle: 1.061 ± 0.012
0.999MetLys: 0.999 ± 0.012
1.875MetLeu: 1.875 ± 0.016
0.608MetMet: 0.608 ± 0.009
0.795MetAsn: 0.795 ± 0.011
1.33MetPro: 1.33 ± 0.015
0.798MetGln: 0.798 ± 0.01
1.25MetArg: 1.25 ± 0.013
1.891MetSer: 1.891 ± 0.016
1.378MetThr: 1.378 ± 0.012
1.387MetVal: 1.387 ± 0.013
0.302MetTrp: 0.302 ± 0.007
0.533MetTyr: 0.533 ± 0.009
0.0MetXaa: 0.0 ± 0.0
Asn
2.939AsnAla: 2.939 ± 0.019
0.475AsnCys: 0.475 ± 0.007
1.961AsnAsp: 1.961 ± 0.019
1.949AsnGlu: 1.949 ± 0.015
1.4AsnPhe: 1.4 ± 0.014
2.889AsnGly: 2.889 ± 0.024
0.859AsnHis: 0.859 ± 0.012
1.986AsnIle: 1.986 ± 0.017
1.624AsnLys: 1.624 ± 0.015
3.326AsnLeu: 3.326 ± 0.025
0.849AsnMet: 0.849 ± 0.012
1.43AsnAsn: 1.43 ± 0.018
2.415AsnPro: 2.415 ± 0.019
1.307AsnGln: 1.307 ± 0.014
1.884AsnArg: 1.884 ± 0.017
2.578AsnSer: 2.578 ± 0.019
2.073AsnThr: 2.073 ± 0.02
2.26AsnVal: 2.26 ± 0.018
0.617AsnTrp: 0.617 ± 0.01
1.065AsnTyr: 1.065 ± 0.014
0.0AsnXaa: 0.0 ± 0.0
Pro
4.937ProAla: 4.937 ± 0.043
0.596ProCys: 0.596 ± 0.011
3.398ProAsp: 3.398 ± 0.023
4.132ProGlu: 4.132 ± 0.031
2.145ProPhe: 2.145 ± 0.016
4.01ProGly: 4.01 ± 0.028
1.265ProHis: 1.265 ± 0.014
2.548ProIle: 2.548 ± 0.02
2.747ProLys: 2.747 ± 0.024
4.668ProLeu: 4.668 ± 0.024
1.115ProMet: 1.115 ± 0.013
2.153ProAsn: 2.153 ± 0.016
4.645ProPro: 4.645 ± 0.059
2.399ProGln: 2.399 ± 0.026
3.4ProArg: 3.4 ± 0.026
5.544ProSer: 5.544 ± 0.038
3.787ProThr: 3.787 ± 0.028
3.567ProVal: 3.567 ± 0.028
0.881ProTrp: 0.881 ± 0.012
1.492ProTyr: 1.492 ± 0.016
0.0ProXaa: 0.0 ± 0.0
Gln
3.435GlnAla: 3.435 ± 0.028
0.463GlnCys: 0.463 ± 0.007
2.232GlnAsp: 2.232 ± 0.017
2.394GlnGlu: 2.394 ± 0.023
1.273GlnPhe: 1.273 ± 0.012
2.538GlnGly: 2.538 ± 0.022
1.049GlnHis: 1.049 ± 0.012
1.781GlnIle: 1.781 ± 0.017
1.825GlnLys: 1.825 ± 0.016
3.411GlnLeu: 3.411 ± 0.025
0.87GlnMet: 0.87 ± 0.012
1.397GlnAsn: 1.397 ± 0.015
2.502GlnPro: 2.502 ± 0.026
2.196GlnGln: 2.196 ± 0.034
2.483GlnArg: 2.483 ± 0.019
2.857GlnSer: 2.857 ± 0.024
2.209GlnThr: 2.209 ± 0.019
2.309GlnVal: 2.309 ± 0.019
0.603GlnTrp: 0.603 ± 0.01
1.113GlnTyr: 1.113 ± 0.013
0.0GlnXaa: 0.0 ± 0.0
Arg
4.514ArgAla: 4.514 ± 0.029
0.78ArgCys: 0.78 ± 0.012
3.493ArgAsp: 3.493 ± 0.027
3.647ArgGlu: 3.647 ± 0.025
2.229ArgPhe: 2.229 ± 0.016
3.701ArgGly: 3.701 ± 0.027
1.587ArgHis: 1.587 ± 0.016
2.873ArgIle: 2.873 ± 0.02
3.197ArgLys: 3.197 ± 0.025
5.553ArgLeu: 5.553 ± 0.03
1.279ArgMet: 1.279 ± 0.013
2.136ArgAsn: 2.136 ± 0.019
3.479ArgPro: 3.479 ± 0.029
2.533ArgGln: 2.533 ± 0.019
4.951ArgArg: 4.951 ± 0.039
4.39ArgSer: 4.39 ± 0.029
3.086ArgThr: 3.086 ± 0.024
3.435ArgVal: 3.435 ± 0.021
1.037ArgTrp: 1.037 ± 0.013
1.679ArgTyr: 1.679 ± 0.013
0.0ArgXaa: 0.0 ± 0.0
Ser
6.05SerAla: 6.05 ± 0.037
0.975SerCys: 0.975 ± 0.014
4.161SerAsp: 4.161 ± 0.028
4.062SerGlu: 4.062 ± 0.024
3.1SerPhe: 3.1 ± 0.022
5.374SerGly: 5.374 ± 0.032
1.878SerHis: 1.878 ± 0.017
3.969SerIle: 3.969 ± 0.027
3.612SerLys: 3.612 ± 0.027
7.135SerLeu: 7.135 ± 0.037
1.718SerMet: 1.718 ± 0.015
2.837SerAsn: 2.837 ± 0.022
5.108SerPro: 5.108 ± 0.04
3.111SerGln: 3.111 ± 0.026
4.805SerArg: 4.805 ± 0.033
7.764SerSer: 7.764 ± 0.055
5.179SerThr: 5.179 ± 0.035
4.458SerVal: 4.458 ± 0.029
1.291SerTrp: 1.291 ± 0.014
2.06SerTyr: 2.06 ± 0.018
0.0SerXaa: 0.0 ± 0.0
Thr
4.983ThrAla: 4.983 ± 0.029
0.83ThrCys: 0.83 ± 0.011
2.844ThrAsp: 2.844 ± 0.019
3.208ThrGlu: 3.208 ± 0.029
2.321ThrPhe: 2.321 ± 0.018
4.166ThrGly: 4.166 ± 0.026
1.24ThrHis: 1.24 ± 0.013
3.176ThrIle: 3.176 ± 0.02
2.708ThrLys: 2.708 ± 0.023
5.282ThrLeu: 5.282 ± 0.032
1.222ThrMet: 1.222 ± 0.013
2.068ThrAsn: 2.068 ± 0.018
4.114ThrPro: 4.114 ± 0.033
2.03ThrGln: 2.03 ± 0.016
3.124ThrArg: 3.124 ± 0.021
4.945ThrSer: 4.945 ± 0.035
4.155ThrThr: 4.155 ± 0.045
3.752ThrVal: 3.752 ± 0.027
1.006ThrTrp: 1.006 ± 0.012
1.647ThrTyr: 1.647 ± 0.015
0.0ThrXaa: 0.0 ± 0.0
Val
5.368ValAla: 5.368 ± 0.027
0.891ValCys: 0.891 ± 0.011
3.807ValAsp: 3.807 ± 0.026
3.916ValGlu: 3.916 ± 0.026
2.631ValPhe: 2.631 ± 0.022
4.131ValGly: 4.131 ± 0.031
1.402ValHis: 1.402 ± 0.014
3.13ValIle: 3.13 ± 0.023
2.983ValLys: 2.983 ± 0.024
5.679ValLeu: 5.679 ± 0.034
1.361ValMet: 1.361 ± 0.014
2.22ValAsn: 2.22 ± 0.018
3.623ValPro: 3.623 ± 0.025
2.337ValGln: 2.337 ± 0.018
3.359ValArg: 3.359 ± 0.023
4.66ValSer: 4.66 ± 0.031
3.62ValThr: 3.62 ± 0.022
4.467ValVal: 4.467 ± 0.027
0.956ValTrp: 0.956 ± 0.013
1.814ValTyr: 1.814 ± 0.019
0.0ValXaa: 0.0 ± 0.0
Trp
1.296TrpAla: 1.296 ± 0.013
0.227TrpCys: 0.227 ± 0.005
0.979TrpAsp: 0.979 ± 0.012
0.965TrpGlu: 0.965 ± 0.012
0.633TrpPhe: 0.633 ± 0.011
1.089TrpGly: 1.089 ± 0.012
0.406TrpHis: 0.406 ± 0.008
0.895TrpIle: 0.895 ± 0.011
0.909TrpLys: 0.909 ± 0.012
1.545TrpLeu: 1.545 ± 0.015
0.414TrpMet: 0.414 ± 0.008
0.694TrpAsn: 0.694 ± 0.009
0.721TrpPro: 0.721 ± 0.011
0.612TrpGln: 0.612 ± 0.009
1.036TrpArg: 1.036 ± 0.013
1.164TrpSer: 1.164 ± 0.013
1.053TrpThr: 1.053 ± 0.012
1.016TrpVal: 1.016 ± 0.013
0.329TrpTrp: 0.329 ± 0.007
0.489TrpTyr: 0.489 ± 0.008
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.138TyrAla: 2.138 ± 0.018
0.462TyrCys: 0.462 ± 0.009
1.671TyrAsp: 1.671 ± 0.017
1.568TyrGlu: 1.568 ± 0.017
1.254TyrPhe: 1.254 ± 0.013
2.146TyrGly: 2.146 ± 0.022
0.77TyrHis: 0.77 ± 0.011
1.416TyrIle: 1.416 ± 0.015
1.153TyrLys: 1.153 ± 0.014
2.715TyrLeu: 2.715 ± 0.02
0.64TyrMet: 0.64 ± 0.009
1.096TyrAsn: 1.096 ± 0.013
1.484TyrPro: 1.484 ± 0.013
1.132TyrGln: 1.132 ± 0.012
1.655TyrArg: 1.655 ± 0.016
1.997TyrSer: 1.997 ± 0.018
1.604TyrThr: 1.604 ± 0.018
1.672TyrVal: 1.672 ± 0.014
0.511TyrTrp: 0.511 ± 0.009
0.948TyrTyr: 0.948 ± 0.012
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 15709 proteins (7536017 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski