Halorubrum pleomorphic virus 9

Taxonomy: Viruses; Monodnaviria; Trapavirae; Saleviricota; Huolimaviricetes; Haloruvirales; Pleolipoviridae; Betapleolipovirus; Betapleolipovirus HRPV9

Average proteome isoelectric point is 5.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 28 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S7HQK6|A0A3S7HQK6_9VIRU Uncharacterized protein OS=Halorubrum pleomorphic virus 9 OX=2126525 PE=4 SV=1
MM1 pKa = 8.01DD2 pKa = 5.04AMSSIWDD9 pKa = 3.8GEE11 pKa = 4.1DD12 pKa = 3.28TIAGVIWILTSIGSINWGLLEE33 pKa = 4.2FFDD36 pKa = 4.37YY37 pKa = 11.26NAVSEE42 pKa = 4.73LGTALGSPTVATVVYY57 pKa = 9.84GAVAVAGVVTLADD70 pKa = 3.07HH71 pKa = 6.98AGFYY75 pKa = 10.42DD76 pKa = 3.75VPDD79 pKa = 3.38VVDD82 pKa = 4.07QIRR85 pKa = 11.84GDD87 pKa = 3.59GGDD90 pKa = 3.15

Molecular weight: 9.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S7IAM3|A0A3S7IAM3_9VIRU Uncharacterized protein OS=Halorubrum pleomorphic virus 9 OX=2126525 PE=4 SV=1
MM1 pKa = 7.15RR2 pKa = 11.84TASVRR7 pKa = 11.84RR8 pKa = 11.84RR9 pKa = 11.84AASGAKK15 pKa = 9.12RR16 pKa = 11.84RR17 pKa = 11.84RR18 pKa = 11.84GRR20 pKa = 11.84VTADD24 pKa = 3.31PVPGRR29 pKa = 11.84TAGSRR34 pKa = 11.84EE35 pKa = 3.85RR36 pKa = 11.84TGSSRR41 pKa = 11.84QPSVPRR47 pKa = 11.84LARR50 pKa = 11.84VAGRR54 pKa = 11.84TGLRR58 pKa = 11.84VRR60 pKa = 11.84RR61 pKa = 11.84VDD63 pKa = 3.48VFSGRR68 pKa = 11.84ASLADD73 pKa = 3.85PDD75 pKa = 4.02PRR77 pKa = 11.84VALGTAVRR85 pKa = 11.84AVVLVAVDD93 pKa = 3.42ATKK96 pKa = 10.17VRR98 pKa = 11.84GYY100 pKa = 11.1VGVATKK106 pKa = 10.41AVAPATVRR114 pKa = 11.84SEE116 pKa = 3.78QHH118 pKa = 6.28HH119 pKa = 7.25ADD121 pKa = 3.6TTSANADD128 pKa = 3.56RR129 pKa = 11.84GTVVTTGLILARR141 pKa = 11.84TKK143 pKa = 10.32HH144 pKa = 6.05ANGASRR150 pKa = 11.84EE151 pKa = 4.17LEE153 pKa = 3.76RR154 pKa = 11.84RR155 pKa = 11.84NWVAGEE161 pKa = 4.08SQPTNSFGRR170 pKa = 11.84SPNSIKK176 pKa = 10.67VGQHH180 pKa = 4.28GG181 pKa = 3.45

Molecular weight: 19.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

28

0

28

4916

45

584

175.6

19.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.337 ± 0.655

0.488 ± 0.157

6.937 ± 0.555

7.771 ± 0.703

2.766 ± 0.436

8.381 ± 0.546

1.607 ± 0.281

4.963 ± 0.643

2.665 ± 0.342

8.401 ± 0.504

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.648 ± 0.167

3.072 ± 0.384

4.394 ± 0.563

2.909 ± 0.325

7.343 ± 0.991

7.323 ± 0.419

6.509 ± 0.667

9.133 ± 0.534

1.404 ± 0.177

2.95 ± 0.299
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski