Corynebacterium genitalium ATCC 33030

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium genitalium

Average proteome isoelectric point is 5.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2216 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D7W9Y6|D7W9Y6_9CORY Hypoxanthine phosphoribosyltransferase OS=Corynebacterium genitalium ATCC 33030 OX=585529 GN=hpt PE=3 SV=1
MM1 pKa = 7.42QSVQVTDD8 pKa = 3.71VPNDD12 pKa = 3.33AQLIDD17 pKa = 3.66VRR19 pKa = 11.84EE20 pKa = 4.14PDD22 pKa = 3.72EE23 pKa = 5.02FADD26 pKa = 3.59THH28 pKa = 6.3AAGAVNLPLSNFAVLAQQIDD48 pKa = 3.89TTEE51 pKa = 3.84PVYY54 pKa = 10.16VICRR58 pKa = 11.84SGGRR62 pKa = 11.84SVEE65 pKa = 3.58ASQYY69 pKa = 10.51LEE71 pKa = 4.52EE72 pKa = 5.02IFGADD77 pKa = 3.21VYY79 pKa = 11.43NVLGGTQAWVNAGLPTEE96 pKa = 4.2

Molecular weight: 10.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D7W968|D7W968_9CORY Uncharacterized protein OS=Corynebacterium genitalium ATCC 33030 OX=585529 GN=HMPREF0291_10606 PE=4 SV=1
MM1 pKa = 8.0PKK3 pKa = 9.04RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84ARR15 pKa = 11.84KK16 pKa = 8.59HH17 pKa = 4.63GFRR20 pKa = 11.84TRR22 pKa = 11.84MNTRR26 pKa = 11.84AGRR29 pKa = 11.84AIVSARR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.59KK38 pKa = 10.64GRR40 pKa = 11.84SKK42 pKa = 11.16LSAA45 pKa = 3.74

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2216

0

2216

705372

39

1585

318.3

34.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.574 ± 0.068

0.654 ± 0.015

6.48 ± 0.051

6.655 ± 0.06

3.294 ± 0.036

8.513 ± 0.048

2.043 ± 0.024

4.962 ± 0.035

3.114 ± 0.043

9.194 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.358 ± 0.021

2.925 ± 0.032

5.255 ± 0.049

3.234 ± 0.033

6.143 ± 0.053

5.633 ± 0.034

6.162 ± 0.041

8.177 ± 0.053

1.394 ± 0.026

2.236 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski