Zebra finch circovirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus

Average proteome isoelectric point is 8.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A142LXX1|A0A142LXX1_9CIRC Capsid protein OS=Zebra finch circovirus OX=1642515 GN=cap PE=3 SV=1
MM1 pKa = 7.84PKK3 pKa = 9.54QARR6 pKa = 11.84EE7 pKa = 4.38SPCKK11 pKa = 10.03RR12 pKa = 11.84WVFTLNNPTEE22 pKa = 4.21EE23 pKa = 3.96EE24 pKa = 4.25VEE26 pKa = 4.26NVKK29 pKa = 10.49KK30 pKa = 10.74LPPSEE35 pKa = 3.77YY36 pKa = 9.92HH37 pKa = 5.22YY38 pKa = 11.01AIVGKK43 pKa = 10.28EE44 pKa = 3.88KK45 pKa = 11.02GEE47 pKa = 3.86QGTPHH52 pKa = 6.35LQGFLHH58 pKa = 6.63LKK60 pKa = 10.07KK61 pKa = 10.27KK62 pKa = 10.34VRR64 pKa = 11.84LNQMKK69 pKa = 10.0QLLPRR74 pKa = 11.84AHH76 pKa = 6.96FEE78 pKa = 3.81RR79 pKa = 11.84ARR81 pKa = 11.84GSDD84 pKa = 3.51EE85 pKa = 6.24DD86 pKa = 3.95NEE88 pKa = 4.6QYY90 pKa = 10.46CSKK93 pKa = 10.32EE94 pKa = 3.49GDD96 pKa = 3.67VILTIGAPAAGNRR109 pKa = 11.84SDD111 pKa = 4.56LAGAVAAVKK120 pKa = 10.28AGRR123 pKa = 11.84AMTEE127 pKa = 3.85VARR130 pKa = 11.84EE131 pKa = 3.7FSEE134 pKa = 6.33AYY136 pKa = 9.91VKK138 pKa = 10.05WGRR141 pKa = 11.84GLKK144 pKa = 10.32DD145 pKa = 3.42LALMIGQKK153 pKa = 10.19PRR155 pKa = 11.84DD156 pKa = 3.87FKK158 pKa = 11.24TEE160 pKa = 4.14VIVLTGPSGVGKK172 pKa = 10.26SRR174 pKa = 11.84WANEE178 pKa = 3.68QEE180 pKa = 4.04GTKK183 pKa = 9.85FYY185 pKa = 11.31KK186 pKa = 10.05MKK188 pKa = 10.64GDD190 pKa = 2.93WWDD193 pKa = 3.88GYY195 pKa = 10.06SNEE198 pKa = 5.05DD199 pKa = 3.24IVVIDD204 pKa = 5.7DD205 pKa = 4.34FYY207 pKa = 11.69GWIPFCEE214 pKa = 4.32LLRR217 pKa = 11.84LTDD220 pKa = 4.49RR221 pKa = 11.84YY222 pKa = 8.43PHH224 pKa = 6.25KK225 pKa = 11.17VPVKK229 pKa = 8.85GSYY232 pKa = 10.43VEE234 pKa = 4.26FTSKK238 pKa = 10.77KK239 pKa = 10.29IIITSNTHH247 pKa = 5.69PDD249 pKa = 2.53HH250 pKa = 6.87WYY252 pKa = 10.6SEE254 pKa = 4.43EE255 pKa = 3.85KK256 pKa = 10.68CYY258 pKa = 10.95VQALFRR264 pKa = 11.84RR265 pKa = 11.84INKK268 pKa = 8.45WLMWDD273 pKa = 3.24VFGFVDD279 pKa = 5.43APDD282 pKa = 3.62AVKK285 pKa = 10.33KK286 pKa = 10.86YY287 pKa = 9.37PINYY291 pKa = 9.36

Molecular weight: 33.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A142LXX3|A0A142LXX3_9CIRC ORFC4 OS=Zebra finch circovirus OX=1642515 GN=ORFC4 PE=4 SV=1
MM1 pKa = 7.76NEE3 pKa = 3.92YY4 pKa = 10.79CPLRR8 pKa = 11.84TTAFAWPKK16 pKa = 10.18SRR18 pKa = 11.84PSPAMRR24 pKa = 11.84TGRR27 pKa = 11.84TGRR30 pKa = 11.84GRR32 pKa = 11.84ATPSPSKK39 pKa = 8.43THH41 pKa = 4.61TWEE44 pKa = 4.2TSSKK48 pKa = 10.29RR49 pKa = 11.84PSCRR53 pKa = 11.84PTRR56 pKa = 11.84WPIGTEE62 pKa = 4.12PEE64 pKa = 4.13SGTCAKK70 pKa = 10.57ASNAYY75 pKa = 10.03SGPDD79 pKa = 3.26HH80 pKa = 7.0SCPP83 pKa = 3.98

Molecular weight: 9.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

680

62

291

170.0

19.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.059 ± 0.745

1.324 ± 0.811

4.265 ± 0.898

5.882 ± 1.061

3.824 ± 0.727

7.5 ± 1.636

2.941 ± 0.355

3.529 ± 0.676

6.324 ± 1.741

7.059 ± 1.223

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.206 ± 0.126

3.824 ± 0.375

7.059 ± 1.564

3.235 ± 0.755

10.294 ± 2.659

5.0 ± 1.745

6.912 ± 1.782

4.853 ± 1.609

3.529 ± 0.381

3.382 ± 0.65
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski