Corynebacterium phage Adelaide

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Samwavirus; Corynebacterium virus Adelaide

Average proteome isoelectric point is 5.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 57 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A514DKL8|A0A514DKL8_9CAUD Uncharacterized protein OS=Corynebacterium phage Adelaide OX=2588499 GN=23 PE=4 SV=1
MM1 pKa = 7.58CWLALVFALGEE12 pKa = 3.99DD13 pKa = 4.22LAAGDD18 pKa = 4.23HH19 pKa = 6.38AADD22 pKa = 3.79LVGALVDD29 pKa = 5.37LGDD32 pKa = 3.94LLGGVRR38 pKa = 11.84WAGWILFLLVDD49 pKa = 4.04GHH51 pKa = 7.62CLMLLGLLGLLFLLGSQGG69 pKa = 3.2

Molecular weight: 7.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A514DKK3|A0A514DKK3_9CAUD Membrane protein OS=Corynebacterium phage Adelaide OX=2588499 GN=22 PE=4 SV=1
MM1 pKa = 7.13TPPVEE6 pKa = 4.29SLAAALSAIGRR17 pKa = 11.84ALDD20 pKa = 3.48EE21 pKa = 4.04ATAALEE27 pKa = 4.32HH28 pKa = 6.6AWNAARR34 pKa = 11.84DD35 pKa = 3.64FHH37 pKa = 7.97QEE39 pKa = 3.29IEE41 pKa = 4.28RR42 pKa = 11.84EE43 pKa = 4.07RR44 pKa = 11.84TRR46 pKa = 11.84RR47 pKa = 11.84PHH49 pKa = 7.05EE50 pKa = 4.01IPAGKK55 pKa = 9.61RR56 pKa = 11.84RR57 pKa = 11.84RR58 pKa = 11.84PYY60 pKa = 10.35GRR62 pKa = 11.84NRR64 pKa = 3.15

Molecular weight: 7.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

57

0

57

13734

47

1803

240.9

26.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.939 ± 0.569

0.604 ± 0.109

7.048 ± 0.327

6.313 ± 0.315

2.563 ± 0.185

8.636 ± 0.488

2.257 ± 0.243

4.711 ± 0.193

3.306 ± 0.204

7.893 ± 0.305

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.512 ± 0.129

2.359 ± 0.181

5.752 ± 0.339

3.502 ± 0.155

7.179 ± 0.431

4.747 ± 0.356

6.473 ± 0.265

6.801 ± 0.288

2.257 ± 0.153

2.148 ± 0.194
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski