Carnobacterium maltaromaticum LMA28

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium; Carnobacterium maltaromaticum

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3539 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K8EQM0|K8EQM0_CARML Uncharacterized protein OS=Carnobacterium maltaromaticum LMA28 OX=1234679 GN=ytcE PE=4 SV=1
MM1 pKa = 7.2SHH3 pKa = 7.02DD4 pKa = 4.21HH5 pKa = 6.1NHH7 pKa = 7.06DD8 pKa = 4.35DD9 pKa = 3.43EE10 pKa = 5.39HH11 pKa = 7.77HH12 pKa = 6.36DD13 pKa = 4.01HH14 pKa = 6.2EE15 pKa = 6.37HH16 pKa = 5.41ITIIDD21 pKa = 3.61EE22 pKa = 4.39NGNEE26 pKa = 4.05EE27 pKa = 4.39LYY29 pKa = 10.83EE30 pKa = 3.88ILFTFDD36 pKa = 2.91SDD38 pKa = 5.19DD39 pKa = 3.56YY40 pKa = 10.6GKK42 pKa = 10.79SYY44 pKa = 11.08VLVYY48 pKa = 9.67PAGIPEE54 pKa = 4.27GEE56 pKa = 4.32EE57 pKa = 3.73IEE59 pKa = 4.44LQAFSYY65 pKa = 10.85VEE67 pKa = 4.1QEE69 pKa = 4.33NGDD72 pKa = 3.74QGDD75 pKa = 4.34LKK77 pKa = 10.79PIEE80 pKa = 4.47TDD82 pKa = 3.6EE83 pKa = 4.11EE84 pKa = 4.18WDD86 pKa = 3.67MIEE89 pKa = 4.26EE90 pKa = 4.12VLNTFMADD98 pKa = 3.3EE99 pKa = 5.13DD100 pKa = 4.55GEE102 pKa = 4.34

Molecular weight: 11.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K8EFY6|K8EFY6_CARML Putative membrane protein OS=Carnobacterium maltaromaticum LMA28 OX=1234679 GN=BN424_1311 PE=4 SV=2
MM1 pKa = 7.92PKK3 pKa = 10.12QKK5 pKa = 7.54THH7 pKa = 6.73RR8 pKa = 11.84GSAKK12 pKa = 9.57RR13 pKa = 11.84FKK15 pKa = 9.81RR16 pKa = 11.84TGGGGLKK23 pKa = 9.52RR24 pKa = 11.84HH25 pKa = 6.2HH26 pKa = 7.17AFTSHH31 pKa = 5.07MFANKK36 pKa = 8.87SQKK39 pKa = 8.6QKK41 pKa = 10.85RR42 pKa = 11.84KK43 pKa = 8.92LRR45 pKa = 11.84KK46 pKa = 9.37AGMVSKK52 pKa = 11.18GDD54 pKa = 3.75FKK56 pKa = 11.14RR57 pKa = 11.84IRR59 pKa = 11.84QQLSQMKK66 pKa = 9.9

Molecular weight: 7.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3539

0

3539

1025100

37

2288

289.7

32.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.01 ± 0.048

0.582 ± 0.011

5.139 ± 0.035

7.386 ± 0.047

4.598 ± 0.034

6.601 ± 0.04

1.652 ± 0.019

8.0 ± 0.045

7.281 ± 0.036

9.864 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.598 ± 0.022

4.994 ± 0.037

3.395 ± 0.026

3.813 ± 0.028

3.394 ± 0.033

6.291 ± 0.036

6.066 ± 0.048

6.818 ± 0.037

0.903 ± 0.015

3.615 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski