Choiromyces venosus 120613-1

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; Pezizomycetes; Pezizales; Tuberaceae; Choiromyces; Choiromyces venosus

Average proteome isoelectric point is 6.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 17720 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N4IY03|A0A3N4IY03_9PEZI Uncharacterized protein (Fragment) OS=Choiromyces venosus 120613-1 OX=1336337 GN=L873DRAFT_1848584 PE=4 SV=1
MM1 pKa = 7.8PIEE4 pKa = 4.5SDD6 pKa = 3.6IKK8 pKa = 10.94VEE10 pKa = 4.19DD11 pKa = 4.27NIVFMSYY18 pKa = 10.48SDD20 pKa = 4.46SIFTILDD27 pKa = 3.7SNTSTDD33 pKa = 3.19EE34 pKa = 4.1EE35 pKa = 5.06SIHH38 pKa = 6.64EE39 pKa = 4.32CDD41 pKa = 5.25AYY43 pKa = 10.11IDD45 pKa = 3.87NNQRR49 pKa = 11.84GPDD52 pKa = 3.44SYY54 pKa = 11.0IQNDD58 pKa = 3.69QEE60 pKa = 4.82SLNNPANSSSPWFQFEE76 pKa = 4.14EE77 pKa = 4.44SHH79 pKa = 6.4TEE81 pKa = 3.54SDD83 pKa = 3.93TNFPEE88 pKa = 6.28ADD90 pKa = 3.25IQDD93 pKa = 3.73KK94 pKa = 11.09NEE96 pKa = 4.0WYY98 pKa = 9.44PFPSS102 pKa = 3.21

Molecular weight: 11.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N4J0K4|A0A3N4J0K4_9PEZI Uncharacterized protein OS=Choiromyces venosus 120613-1 OX=1336337 GN=L873DRAFT_402780 PE=4 SV=1
PP1 pKa = 7.74PSLLQHH7 pKa = 6.82RR8 pKa = 11.84PPSLLQHH15 pKa = 6.78RR16 pKa = 11.84PPSLLQHH23 pKa = 6.78RR24 pKa = 11.84PPSLLQHH31 pKa = 6.78RR32 pKa = 11.84PPSLLQHH39 pKa = 6.78RR40 pKa = 11.84PPSLLQHH47 pKa = 6.78RR48 pKa = 11.84PPSLLQHH55 pKa = 6.78RR56 pKa = 11.84PPSLLQHH63 pKa = 6.78RR64 pKa = 11.84PPSLLQHH71 pKa = 6.78RR72 pKa = 11.84PPSLLQHH79 pKa = 6.78RR80 pKa = 11.84PPSLLQHH87 pKa = 6.78RR88 pKa = 11.84PPSLLQHH95 pKa = 6.78RR96 pKa = 11.84PPSLLQHH103 pKa = 6.79RR104 pKa = 11.84PPP106 pKa = 4.75

Molecular weight: 12.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

17720

0

17720

5377989

49

5694

303.5

33.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.443 ± 0.017

1.401 ± 0.01

5.136 ± 0.015

6.518 ± 0.026

3.76 ± 0.013

7.044 ± 0.02

2.497 ± 0.012

5.213 ± 0.015

5.409 ± 0.022

9.028 ± 0.02

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.189 ± 0.009

3.842 ± 0.013

6.185 ± 0.027

3.707 ± 0.017

6.051 ± 0.017

8.271 ± 0.025

6.039 ± 0.017

6.094 ± 0.016

1.396 ± 0.008

2.775 ± 0.01
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski