Snakehead rhabdovirus (SHRV)

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Gammarhabdovirinae; Novirhabdovirus; Snakehead novirhabdovirus

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q9QJT9|NCAP_SHRV Nucleoprotein OS=Snakehead rhabdovirus OX=103603 GN=N PE=3 SV=1
MM1 pKa = 7.77AFQKK5 pKa = 10.68EE6 pKa = 4.4FFGLRR11 pKa = 11.84DD12 pKa = 3.59VKK14 pKa = 11.12VDD16 pKa = 3.78LSAGEE21 pKa = 4.52GLDD24 pKa = 3.67FDD26 pKa = 4.51PSEE29 pKa = 4.52VEE31 pKa = 3.73LTVYY35 pKa = 9.26RR36 pKa = 11.84TGADD40 pKa = 3.17TDD42 pKa = 3.77GNTIIKK48 pKa = 10.2ALAAVGGPKK57 pKa = 9.72TNEE60 pKa = 3.79ALSVLLAFVTLGTDD74 pKa = 2.85QDD76 pKa = 3.88EE77 pKa = 4.66YY78 pKa = 9.81EE79 pKa = 4.19TRR81 pKa = 11.84IKK83 pKa = 10.12ILKK86 pKa = 9.84EE87 pKa = 3.14IGFSVKK93 pKa = 9.34EE94 pKa = 3.77VPMAKK99 pKa = 9.87DD100 pKa = 3.06ASSGIEE106 pKa = 3.71APLEE110 pKa = 3.88NVAALVKK117 pKa = 10.53PEE119 pKa = 3.92TVYY122 pKa = 10.85QVIRR126 pKa = 11.84GVLYY130 pKa = 9.55TCALFVKK137 pKa = 10.28YY138 pKa = 10.15NVEE141 pKa = 4.1KK142 pKa = 8.09MQKK145 pKa = 9.45YY146 pKa = 9.75IKK148 pKa = 10.5NKK150 pKa = 10.08LPALATSYY158 pKa = 10.53GVPEE162 pKa = 4.58LEE164 pKa = 4.23EE165 pKa = 4.53FPTEE169 pKa = 3.89SSALKK174 pKa = 10.48KK175 pKa = 10.17LASCIRR181 pKa = 11.84PGQRR185 pKa = 11.84ITNALYY191 pKa = 10.7AFLLVEE197 pKa = 4.28MARR200 pKa = 11.84PEE202 pKa = 4.25TQQGARR208 pKa = 11.84ALAAMRR214 pKa = 11.84INGTGMTMVGLFTQAAKK231 pKa = 10.89NLGATPSDD239 pKa = 3.95LLEE242 pKa = 4.48DD243 pKa = 3.49LCMRR247 pKa = 11.84SLVDD251 pKa = 3.14SARR254 pKa = 11.84RR255 pKa = 11.84IVRR258 pKa = 11.84LMVQVSQAEE267 pKa = 4.57TIQARR272 pKa = 11.84YY273 pKa = 9.15AVMMSRR279 pKa = 11.84MLNEE283 pKa = 4.63NYY285 pKa = 9.88FKK287 pKa = 10.9AYY289 pKa = 9.95GLNDD293 pKa = 3.3NSRR296 pKa = 11.84ISAILVAVNGHH307 pKa = 5.72FSEE310 pKa = 4.47DD311 pKa = 3.45TIEE314 pKa = 4.05ALEE317 pKa = 4.66GIKK320 pKa = 10.6VSAEE324 pKa = 3.8FADD327 pKa = 4.08LARR330 pKa = 11.84RR331 pKa = 11.84IAIALIEE338 pKa = 4.55KK339 pKa = 9.91YY340 pKa = 10.85DD341 pKa = 3.68NASDD345 pKa = 3.76GGEE348 pKa = 4.04GASEE352 pKa = 4.23IIKK355 pKa = 10.32SAVRR359 pKa = 11.84GSSGAFKK366 pKa = 10.72GSRR369 pKa = 11.84GKK371 pKa = 9.6PQGRR375 pKa = 11.84RR376 pKa = 11.84QEE378 pKa = 4.0ASGEE382 pKa = 4.01GDD384 pKa = 4.46LDD386 pKa = 4.99SEE388 pKa = 5.61DD389 pKa = 6.32DD390 pKa = 4.69DD391 pKa = 4.84DD392 pKa = 5.33QDD394 pKa = 3.64YY395 pKa = 11.68SKK397 pKa = 11.44YY398 pKa = 11.04AA399 pKa = 3.36

Molecular weight: 43.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q9QJT8|PHOSP_SHRV Phosphoprotein OS=Snakehead rhabdovirus OX=103603 GN=P PE=3 SV=1
MM1 pKa = 7.62PFIRR5 pKa = 11.84RR6 pKa = 11.84PKK8 pKa = 9.64RR9 pKa = 11.84AILIPPLHH17 pKa = 6.52LTLKK21 pKa = 10.75DD22 pKa = 3.55DD23 pKa = 4.57DD24 pKa = 4.1KK25 pKa = 11.56VLVVEE30 pKa = 4.56TVGTLIISGMTPSNLTEE47 pKa = 4.1KK48 pKa = 10.74LGLAMKK54 pKa = 9.94LASAILGGDD63 pKa = 3.32SHH65 pKa = 7.28PAFNPLVEE73 pKa = 4.37IFSGAMEE80 pKa = 4.72FGASVEE86 pKa = 4.39KK87 pKa = 10.73LDD89 pKa = 4.89FMTRR93 pKa = 11.84EE94 pKa = 3.98NKK96 pKa = 10.06VITTYY101 pKa = 10.88KK102 pKa = 8.52VARR105 pKa = 11.84GKK107 pKa = 10.31AVALSNFPMEE117 pKa = 4.17KK118 pKa = 9.55RR119 pKa = 11.84VGEE122 pKa = 4.07KK123 pKa = 10.34SYY125 pKa = 8.19TTQIRR130 pKa = 11.84NGSITYY136 pKa = 8.64TGSFLFSAEE145 pKa = 4.04HH146 pKa = 6.7VGLKK150 pKa = 10.46DD151 pKa = 3.55NRR153 pKa = 11.84SLFAAGEE160 pKa = 4.26GLRR163 pKa = 11.84EE164 pKa = 4.19SPDD167 pKa = 3.08MAQARR172 pKa = 11.84EE173 pKa = 4.15AFAGSLPKK181 pKa = 10.64GKK183 pKa = 10.07NEE185 pKa = 4.17SSRR188 pKa = 11.84KK189 pKa = 9.17

Molecular weight: 20.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3425

122

1983

570.8

64.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.511 ± 1.086

1.547 ± 0.353

5.343 ± 0.407

7.504 ± 0.561

3.474 ± 0.348

6.19 ± 0.51

2.277 ± 0.406

6.102 ± 0.206

6.657 ± 0.549

10.891 ± 1.35

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.248 ± 0.408

3.533 ± 0.286

4.847 ± 0.753

3.299 ± 0.288

6.102 ± 0.512

7.62 ± 0.472

6.102 ± 0.385

5.752 ± 0.39

1.314 ± 0.358

2.686 ± 0.386
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski