Amino acid dipepetide frequency for Snakehead rhabdovirus (SHRV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.089AlaAla: 4.089 ± 1.286
1.168AlaCys: 1.168 ± 0.392
1.752AlaAsp: 1.752 ± 0.836
4.381AlaGlu: 4.381 ± 1.722
2.336AlaPhe: 2.336 ± 1.835
4.089AlaGly: 4.089 ± 1.251
2.336AlaHis: 2.336 ± 0.594
3.505AlaIle: 3.505 ± 1.039
4.673AlaLys: 4.673 ± 0.56
9.638AlaLeu: 9.638 ± 2.763
2.044AlaMet: 2.044 ± 0.958
1.46AlaAsn: 1.46 ± 0.94
2.044AlaPro: 2.044 ± 0.499
2.629AlaGln: 2.629 ± 1.282
4.381AlaArg: 4.381 ± 1.768
5.257AlaSer: 5.257 ± 1.697
2.921AlaThr: 2.921 ± 1.221
3.797AlaVal: 3.797 ± 1.28
0.584AlaTrp: 0.584 ± 0.32
1.752AlaTyr: 1.752 ± 0.335
0.0AlaXaa: 0.0 ± 0.0
Cys
1.168CysAla: 1.168 ± 0.748
0.584CysCys: 0.584 ± 0.799
0.876CysAsp: 0.876 ± 0.498
0.584CysGlu: 0.584 ± 0.332
0.876CysPhe: 0.876 ± 0.705
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
1.46CysIle: 1.46 ± 0.633
0.584CysLys: 0.584 ± 0.472
1.752CysLeu: 1.752 ± 0.652
0.292CysMet: 0.292 ± 0.382
0.584CysAsn: 0.584 ± 0.32
1.46CysPro: 1.46 ± 1.019
0.876CysGln: 0.876 ± 0.705
0.584CysArg: 0.584 ± 0.32
2.044CysSer: 2.044 ± 0.802
0.876CysThr: 0.876 ± 0.498
0.876CysVal: 0.876 ± 0.498
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.629AspAla: 2.629 ± 0.868
0.876AspCys: 0.876 ± 0.613
3.505AspAsp: 3.505 ± 1.274
2.044AspGlu: 2.044 ± 0.589
2.336AspPhe: 2.336 ± 0.583
3.797AspGly: 3.797 ± 0.796
0.584AspHis: 0.584 ± 0.472
2.044AspIle: 2.044 ± 1.162
2.629AspLys: 2.629 ± 0.969
9.054AspLeu: 9.054 ± 1.762
0.876AspMet: 0.876 ± 0.376
4.381AspAsn: 4.381 ± 1.036
2.629AspPro: 2.629 ± 1.351
2.629AspGln: 2.629 ± 0.415
3.213AspArg: 3.213 ± 1.247
3.797AspSer: 3.797 ± 0.551
3.505AspThr: 3.505 ± 1.654
2.044AspVal: 2.044 ± 0.739
0.292AspTrp: 0.292 ± 0.166
0.584AspTyr: 0.584 ± 0.303
0.0AspXaa: 0.0 ± 0.0
Glu
5.841GluAla: 5.841 ± 0.904
2.044GluCys: 2.044 ± 0.693
4.381GluAsp: 4.381 ± 0.722
5.549GluGlu: 5.549 ± 1.807
3.505GluPhe: 3.505 ± 1.093
4.673GluGly: 4.673 ± 1.442
1.168GluHis: 1.168 ± 0.485
3.797GluIle: 3.797 ± 0.551
7.886GluLys: 7.886 ± 1.437
6.133GluLeu: 6.133 ± 1.917
1.46GluMet: 1.46 ± 0.462
3.505GluAsn: 3.505 ± 0.912
2.044GluPro: 2.044 ± 0.588
0.876GluGln: 0.876 ± 0.317
6.133GluArg: 6.133 ± 2.246
4.965GluSer: 4.965 ± 1.846
6.133GluThr: 6.133 ± 1.084
2.336GluVal: 2.336 ± 0.495
1.46GluTrp: 1.46 ± 0.615
1.168GluTyr: 1.168 ± 0.339
0.0GluXaa: 0.0 ± 0.0
Phe
2.336PheAla: 2.336 ± 0.658
0.584PheCys: 0.584 ± 0.32
1.46PheAsp: 1.46 ± 0.293
1.752PheGlu: 1.752 ± 1.058
1.46PhePhe: 1.46 ± 0.293
2.336PheGly: 2.336 ± 0.436
0.584PheHis: 0.584 ± 0.32
1.752PheIle: 1.752 ± 0.468
3.505PheLys: 3.505 ± 0.996
3.505PheLeu: 3.505 ± 0.347
0.584PheMet: 0.584 ± 0.321
1.168PheAsn: 1.168 ± 0.485
2.044PhePro: 2.044 ± 0.665
1.46PheGln: 1.46 ± 0.51
0.584PheArg: 0.584 ± 0.32
3.505PheSer: 3.505 ± 0.826
2.336PheThr: 2.336 ± 0.88
2.336PheVal: 2.336 ± 0.495
0.584PheTrp: 0.584 ± 0.32
0.876PheTyr: 0.876 ± 0.498
0.0PheXaa: 0.0 ± 0.0
Gly
3.505GlyAla: 3.505 ± 1.777
0.876GlyCys: 0.876 ± 0.498
4.673GlyAsp: 4.673 ± 0.636
4.381GlyGlu: 4.381 ± 2.31
2.044GlyPhe: 2.044 ± 0.297
4.965GlyGly: 4.965 ± 0.844
1.168GlyHis: 1.168 ± 1.107
3.505GlyIle: 3.505 ± 0.355
4.089GlyLys: 4.089 ± 2.165
9.346GlyLeu: 9.346 ± 1.523
1.752GlyMet: 1.752 ± 1.051
1.752GlyAsn: 1.752 ± 0.545
1.752GlyPro: 1.752 ± 0.674
1.168GlyGln: 1.168 ± 0.339
2.629GlyArg: 2.629 ± 0.577
3.505GlySer: 3.505 ± 1.13
2.629GlyThr: 2.629 ± 1.006
4.381GlyVal: 4.381 ± 0.888
0.876GlyTrp: 0.876 ± 0.498
2.921GlyTyr: 2.921 ± 0.959
0.0GlyXaa: 0.0 ± 0.0
His
1.168HisAla: 1.168 ± 0.392
0.876HisCys: 0.876 ± 0.317
0.292HisAsp: 0.292 ± 0.166
0.292HisGlu: 0.292 ± 0.166
1.752HisPhe: 1.752 ± 0.585
1.168HisGly: 1.168 ± 0.392
0.876HisHis: 0.876 ± 0.613
1.752HisIle: 1.752 ± 0.634
0.876HisLys: 0.876 ± 0.705
2.629HisLeu: 2.629 ± 0.969
1.168HisMet: 1.168 ± 0.392
0.584HisAsn: 0.584 ± 0.599
2.044HisPro: 2.044 ± 1.089
1.168HisGln: 1.168 ± 0.838
1.46HisArg: 1.46 ± 0.512
1.168HisSer: 1.168 ± 0.392
1.46HisThr: 1.46 ± 1.145
0.876HisVal: 0.876 ± 1.004
0.876HisTrp: 0.876 ± 0.317
0.292HisTyr: 0.292 ± 0.4
0.0HisXaa: 0.0 ± 0.0
Ile
2.336IleAla: 2.336 ± 0.625
0.584IleCys: 0.584 ± 0.332
4.089IleAsp: 4.089 ± 1.928
5.841IleGlu: 5.841 ± 0.984
2.044IlePhe: 2.044 ± 0.977
1.168IleGly: 1.168 ± 0.386
1.752IleHis: 1.752 ± 1.212
3.213IleIle: 3.213 ± 0.901
4.381IleLys: 4.381 ± 1.375
5.549IleLeu: 5.549 ± 1.767
1.752IleMet: 1.752 ± 0.617
2.336IleAsn: 2.336 ± 0.961
3.213IlePro: 3.213 ± 0.757
0.876IleGln: 0.876 ± 0.88
4.089IleArg: 4.089 ± 0.637
4.673IleSer: 4.673 ± 1.038
5.549IleThr: 5.549 ± 0.826
4.089IleVal: 4.089 ± 1.811
1.168IleTrp: 1.168 ± 0.392
2.336IleTyr: 2.336 ± 0.89
0.0IleXaa: 0.0 ± 0.0
Lys
5.257LysAla: 5.257 ± 1.34
0.292LysCys: 0.292 ± 0.4
3.213LysAsp: 3.213 ± 0.579
4.381LysGlu: 4.381 ± 1.529
2.629LysPhe: 2.629 ± 1.116
5.549LysGly: 5.549 ± 1.981
1.168LysHis: 1.168 ± 0.664
2.921LysIle: 2.921 ± 0.51
4.965LysLys: 4.965 ± 1.05
6.717LysLeu: 6.717 ± 0.811
1.752LysMet: 1.752 ± 1.485
1.752LysAsn: 1.752 ± 0.702
3.797LysPro: 3.797 ± 1.354
0.876LysGln: 0.876 ± 0.498
4.965LysArg: 4.965 ± 1.387
5.549LysSer: 5.549 ± 1.672
3.505LysThr: 3.505 ± 1.184
4.673LysVal: 4.673 ± 1.096
0.292LysTrp: 0.292 ± 0.4
2.336LysTyr: 2.336 ± 1.532
0.0LysXaa: 0.0 ± 0.0
Leu
7.009LeuAla: 7.009 ± 1.908
2.921LeuCys: 2.921 ± 0.663
6.133LeuAsp: 6.133 ± 1.62
9.054LeuGlu: 9.054 ± 1.444
5.549LeuPhe: 5.549 ± 1.182
9.054LeuGly: 9.054 ± 1.256
2.044LeuHis: 2.044 ± 0.612
6.717LeuIle: 6.717 ± 0.9
8.178LeuLys: 8.178 ± 1.656
10.806LeuLeu: 10.806 ± 2.547
1.752LeuMet: 1.752 ± 0.653
5.257LeuAsn: 5.257 ± 0.85
5.257LeuPro: 5.257 ± 1.531
3.213LeuGln: 3.213 ± 1.141
5.257LeuArg: 5.257 ± 0.913
8.178LeuSer: 8.178 ± 1.335
5.549LeuThr: 5.549 ± 0.739
4.673LeuVal: 4.673 ± 1.146
0.584LeuTrp: 0.584 ± 0.32
1.752LeuTyr: 1.752 ± 0.557
0.0LeuXaa: 0.0 ± 0.0
Met
2.629MetAla: 2.629 ± 1.08
0.292MetCys: 0.292 ± 0.166
0.876MetAsp: 0.876 ± 0.317
2.336MetGlu: 2.336 ± 1.517
0.584MetPhe: 0.584 ± 0.32
1.168MetGly: 1.168 ± 0.81
0.292MetHis: 0.292 ± 0.4
0.584MetIle: 0.584 ± 0.332
0.584MetLys: 0.584 ± 0.543
2.044MetLeu: 2.044 ± 0.805
0.584MetMet: 0.584 ± 0.653
0.0MetAsn: 0.0 ± 0.0
1.168MetPro: 1.168 ± 0.622
0.292MetGln: 0.292 ± 0.382
2.044MetArg: 2.044 ± 1.054
2.044MetSer: 2.044 ± 0.812
3.213MetThr: 3.213 ± 0.724
1.46MetVal: 1.46 ± 0.584
0.0MetTrp: 0.0 ± 0.0
0.292MetTyr: 0.292 ± 0.166
0.0MetXaa: 0.0 ± 0.0
Asn
2.336AsnAla: 2.336 ± 0.677
0.0AsnCys: 0.0 ± 0.0
2.044AsnAsp: 2.044 ± 1.15
3.505AsnGlu: 3.505 ± 0.612
0.876AsnPhe: 0.876 ± 0.376
1.46AsnGly: 1.46 ± 0.918
0.584AsnHis: 0.584 ± 0.713
1.752AsnIle: 1.752 ± 0.996
2.336AsnLys: 2.336 ± 0.913
5.549AsnLeu: 5.549 ± 0.576
1.168AsnMet: 1.168 ± 1.1
0.584AsnAsn: 0.584 ± 0.713
2.336AsnPro: 2.336 ± 0.493
0.876AsnGln: 0.876 ± 0.529
3.213AsnArg: 3.213 ± 0.726
1.46AsnSer: 1.46 ± 0.51
1.46AsnThr: 1.46 ± 0.293
2.629AsnVal: 2.629 ± 0.991
0.292AsnTrp: 0.292 ± 0.4
0.876AsnTyr: 0.876 ± 0.446
0.0AsnXaa: 0.0 ± 0.0
Pro
2.044ProAla: 2.044 ± 0.685
0.292ProCys: 0.292 ± 0.4
2.336ProAsp: 2.336 ± 0.984
4.673ProGlu: 4.673 ± 1.466
0.876ProPhe: 0.876 ± 0.376
1.752ProGly: 1.752 ± 1.225
2.336ProHis: 2.336 ± 0.89
1.46ProIle: 1.46 ± 0.433
2.629ProLys: 2.629 ± 1.639
3.797ProLeu: 3.797 ± 0.974
1.168ProMet: 1.168 ± 1.04
2.044ProAsn: 2.044 ± 0.928
2.629ProPro: 2.629 ± 1.037
1.752ProGln: 1.752 ± 0.335
4.381ProArg: 4.381 ± 1.518
7.593ProSer: 7.593 ± 1.324
2.044ProThr: 2.044 ± 0.746
2.336ProVal: 2.336 ± 1.687
0.584ProTrp: 0.584 ± 0.32
1.752ProTyr: 1.752 ± 0.634
0.0ProXaa: 0.0 ± 0.0
Gln
3.797GlnAla: 3.797 ± 0.798
0.876GlnCys: 0.876 ± 0.317
3.213GlnAsp: 3.213 ± 0.765
1.46GlnGlu: 1.46 ± 0.462
0.584GlnPhe: 0.584 ± 0.32
1.752GlnGly: 1.752 ± 0.609
0.876GlnHis: 0.876 ± 0.498
1.168GlnIle: 1.168 ± 1.052
2.336GlnLys: 2.336 ± 0.505
2.921GlnLeu: 2.921 ± 1.297
0.876GlnMet: 0.876 ± 0.613
0.876GlnAsn: 0.876 ± 0.705
0.584GlnPro: 0.584 ± 0.332
1.168GlnGln: 1.168 ± 0.339
1.752GlnArg: 1.752 ± 0.335
2.629GlnSer: 2.629 ± 0.896
1.46GlnThr: 1.46 ± 0.512
2.629GlnVal: 2.629 ± 1.516
0.584GlnTrp: 0.584 ± 0.713
1.46GlnTyr: 1.46 ± 0.648
0.0GlnXaa: 0.0 ± 0.0
Arg
5.257ArgAla: 5.257 ± 2.419
0.584ArgCys: 0.584 ± 0.32
4.673ArgAsp: 4.673 ± 2.337
4.381ArgGlu: 4.381 ± 1.491
0.292ArgPhe: 0.292 ± 0.166
6.425ArgGly: 6.425 ± 0.763
1.168ArgHis: 1.168 ± 0.656
4.673ArgIle: 4.673 ± 1.845
2.921ArgLys: 2.921 ± 0.802
5.257ArgLeu: 5.257 ± 1.505
2.044ArgMet: 2.044 ± 0.778
0.876ArgAsn: 0.876 ± 0.439
2.336ArgPro: 2.336 ± 1.7
2.336ArgGln: 2.336 ± 1.356
4.965ArgArg: 4.965 ± 1.279
3.505ArgSer: 3.505 ± 0.943
2.921ArgThr: 2.921 ± 0.794
4.381ArgVal: 4.381 ± 1.481
0.584ArgTrp: 0.584 ± 0.332
1.46ArgTyr: 1.46 ± 0.51
0.0ArgXaa: 0.0 ± 0.0
Ser
5.549SerAla: 5.549 ± 2.207
0.292SerCys: 0.292 ± 0.382
2.336SerAsp: 2.336 ± 0.771
6.717SerGlu: 6.717 ± 1.046
1.168SerPhe: 1.168 ± 0.485
4.965SerGly: 4.965 ± 0.863
1.46SerHis: 1.46 ± 0.517
6.717SerIle: 6.717 ± 1.918
3.797SerLys: 3.797 ± 0.647
8.762SerLeu: 8.762 ± 2.316
0.876SerMet: 0.876 ± 0.483
2.044SerAsn: 2.044 ± 0.678
5.257SerPro: 5.257 ± 1.347
3.213SerGln: 3.213 ± 1.096
5.841SerArg: 5.841 ± 0.967
5.257SerSer: 5.257 ± 1.08
4.673SerThr: 4.673 ± 1.547
4.089SerVal: 4.089 ± 1.066
1.46SerTrp: 1.46 ± 0.74
1.752SerTyr: 1.752 ± 0.413
0.0SerXaa: 0.0 ± 0.0
Thr
1.752ThrAla: 1.752 ± 0.722
0.876ThrCys: 0.876 ± 0.304
2.629ThrAsp: 2.629 ± 1.179
4.089ThrGlu: 4.089 ± 0.695
2.044ThrPhe: 2.044 ± 0.802
1.752ThrGly: 1.752 ± 1.147
2.629ThrHis: 2.629 ± 1.244
6.717ThrIle: 6.717 ± 0.949
4.089ThrLys: 4.089 ± 1.177
7.009ThrLeu: 7.009 ± 1.177
0.876ThrMet: 0.876 ± 0.304
2.044ThrAsn: 2.044 ± 0.809
3.213ThrPro: 3.213 ± 1.48
4.381ThrGln: 4.381 ± 0.837
2.336ThrArg: 2.336 ± 0.527
3.797ThrSer: 3.797 ± 1.045
2.336ThrThr: 2.336 ± 0.835
4.381ThrVal: 4.381 ± 1.663
1.752ThrTrp: 1.752 ± 0.996
2.336ThrTyr: 2.336 ± 1.108
0.0ThrXaa: 0.0 ± 0.0
Val
4.381ValAla: 4.381 ± 1.283
0.876ValCys: 0.876 ± 0.875
3.213ValAsp: 3.213 ± 1.414
5.257ValGlu: 5.257 ± 1.015
2.629ValPhe: 2.629 ± 0.644
2.921ValGly: 2.921 ± 1.712
1.168ValHis: 1.168 ± 0.392
4.673ValIle: 4.673 ± 0.942
4.673ValLys: 4.673 ± 0.999
4.673ValLeu: 4.673 ± 0.823
0.584ValMet: 0.584 ± 0.303
2.044ValAsn: 2.044 ± 0.611
3.213ValPro: 3.213 ± 0.647
1.168ValGln: 1.168 ± 0.339
1.46ValArg: 1.46 ± 0.72
4.673ValSer: 4.673 ± 0.7
4.089ValThr: 4.089 ± 1.341
3.505ValVal: 3.505 ± 0.717
0.584ValTrp: 0.584 ± 0.332
1.752ValTyr: 1.752 ± 0.557
0.0ValXaa: 0.0 ± 0.0
Trp
0.292TrpAla: 0.292 ± 0.166
0.292TrpCys: 0.292 ± 0.166
0.292TrpAsp: 0.292 ± 0.166
2.921TrpGlu: 2.921 ± 1.277
0.292TrpPhe: 0.292 ± 0.166
1.752TrpGly: 1.752 ± 0.557
0.0TrpHis: 0.0 ± 0.0
0.876TrpIle: 0.876 ± 0.317
0.876TrpLys: 0.876 ± 0.317
0.876TrpLeu: 0.876 ± 0.317
0.292TrpMet: 0.292 ± 0.535
0.584TrpAsn: 0.584 ± 0.332
0.876TrpPro: 0.876 ± 0.705
0.0TrpGln: 0.0 ± 0.0
0.584TrpArg: 0.584 ± 0.332
0.292TrpSer: 0.292 ± 0.4
1.168TrpThr: 1.168 ± 0.392
0.584TrpVal: 0.584 ± 0.799
0.0TrpTrp: 0.0 ± 0.0
0.292TrpTyr: 0.292 ± 0.4
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.752TyrAla: 1.752 ± 0.909
0.292TyrCys: 0.292 ± 0.4
1.46TyrAsp: 1.46 ± 0.675
1.46TyrGlu: 1.46 ± 0.633
0.876TyrPhe: 0.876 ± 0.446
1.168TyrGly: 1.168 ± 0.606
0.584TyrHis: 0.584 ± 0.332
1.752TyrIle: 1.752 ± 0.366
0.584TyrLys: 0.584 ± 0.543
2.921TyrLeu: 2.921 ± 1.004
0.292TyrMet: 0.292 ± 0.166
1.46TyrAsn: 1.46 ± 0.293
0.584TyrPro: 0.584 ± 0.332
2.044TyrGln: 2.044 ± 0.533
1.168TyrArg: 1.168 ± 0.339
2.336TyrSer: 2.336 ± 0.965
3.213TyrThr: 3.213 ± 0.759
1.46TyrVal: 1.46 ± 0.83
0.584TyrTrp: 0.584 ± 0.32
0.876TyrTyr: 0.876 ± 0.498
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (3425 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski