Vibrio furnissii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;

Average proteome isoelectric point is 6.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4417 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0Q2V556|A0A0Q2V556_VIBFU Multidrug DMT transporter OS=Vibrio furnissii OX=29494 GN=AMR76_01215 PE=4 SV=1
MM1 pKa = 6.74KK2 pKa = 10.06TKK4 pKa = 10.15IALFITAALASGSALANNDD23 pKa = 2.67ATANLYY29 pKa = 7.77LTNDD33 pKa = 3.4SAVTITQVSSSQGNSALIDD52 pKa = 3.56SSFSSGNTLSVYY64 pKa = 10.83QNGGDD69 pKa = 3.35NAATIRR75 pKa = 11.84AFDD78 pKa = 3.62VDD80 pKa = 3.92GSTLAINQTGDD91 pKa = 3.29TNTGSITALGAKK103 pKa = 9.1NANFSINQGGDD114 pKa = 3.33LNDD117 pKa = 4.07ASIKK121 pKa = 8.35TDD123 pKa = 2.81NYY125 pKa = 10.1HH126 pKa = 6.96RR127 pKa = 11.84GRR129 pKa = 11.84AYY131 pKa = 10.67SYY133 pKa = 11.72DD134 pKa = 3.67NDD136 pKa = 4.17TVSVVQNGTEE146 pKa = 3.89NTTSVEE152 pKa = 4.31LKK154 pKa = 10.65RR155 pKa = 11.84GTDD158 pKa = 3.57DD159 pKa = 4.75SNVSLAASGSGNQANVVLDD178 pKa = 3.7WADD181 pKa = 3.1SSMVTGNVQGTDD193 pKa = 2.98NVADD197 pKa = 3.68VLIDD201 pKa = 3.35SGYY204 pKa = 8.84GNEE207 pKa = 4.64VAFTQNGTANQLDD220 pKa = 3.96VDD222 pKa = 4.12VLYY225 pKa = 11.49SNINTVHH232 pKa = 5.56VNQTGSNNAADD243 pKa = 4.0VDD245 pKa = 5.69LIASDD250 pKa = 5.04DD251 pKa = 3.56NDD253 pKa = 3.48IYY255 pKa = 10.66VTQSNSNADD264 pKa = 3.3ANVYY268 pKa = 9.24VNWSSNNTISVMQTYY283 pKa = 11.14GDD285 pKa = 3.72TANVNLALSHH295 pKa = 6.46NNTVTISQYY304 pKa = 11.33

Molecular weight: 31.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0Q2SHP7|A0A0Q2SHP7_VIBFU Uncharacterized protein OS=Vibrio furnissii OX=29494 GN=AMR76_05735 PE=4 SV=1
MM1 pKa = 7.06IRR3 pKa = 11.84HH4 pKa = 5.83RR5 pKa = 11.84PFHH8 pKa = 7.86RR9 pKa = 11.84MMLRR13 pKa = 11.84ASILSWILVTLMPVINAHH31 pKa = 6.17GSHH34 pKa = 6.42AGVWATLCTINGFEE48 pKa = 4.58LVKK51 pKa = 10.74VDD53 pKa = 4.34DD54 pKa = 5.26GKK56 pKa = 10.11PQTQHH61 pKa = 6.31GKK63 pKa = 8.3PCPFAHH69 pKa = 6.96FSNFHH74 pKa = 5.63TDD76 pKa = 2.87KK77 pKa = 11.34LPTTRR82 pKa = 11.84PNTTQSAVISDD93 pKa = 4.56RR94 pKa = 11.84YY95 pKa = 8.6TFLALSVRR103 pKa = 11.84FEE105 pKa = 4.18RR106 pKa = 11.84QVPRR110 pKa = 11.84GPPQSATSS118 pKa = 3.42

Molecular weight: 13.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4417

0

4417

1435389

36

1652

325.0

36.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.374 ± 0.04

1.04 ± 0.014

5.499 ± 0.034

5.901 ± 0.035

4.041 ± 0.027

6.8 ± 0.034

2.526 ± 0.021

5.971 ± 0.027

4.662 ± 0.032

10.625 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.785 ± 0.02

3.872 ± 0.024

4.006 ± 0.023

4.871 ± 0.032

4.88 ± 0.029

6.28 ± 0.028

5.372 ± 0.021

7.239 ± 0.033

1.285 ± 0.015

2.971 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski