Aeromicrobium camelliae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Nocardioidaceae; Aeromicrobium

Average proteome isoelectric point is 5.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2929 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N6X3D5|A0A3N6X3D5_9ACTN DNA polymerase III subunit delta' OS=Aeromicrobium camelliae OX=1538144 GN=EHW97_07580 PE=4 SV=1
MM1 pKa = 7.19NRR3 pKa = 11.84LLAALALVLSGLVVTAQPAAAHH25 pKa = 5.93GQCEE29 pKa = 4.67GPSDD33 pKa = 3.62IPILVEE39 pKa = 3.83YY40 pKa = 10.39GSLAGAPTTVCAQGAAGMRR59 pKa = 11.84ALDD62 pKa = 4.35ALSMAGIEE70 pKa = 4.12IEE72 pKa = 4.29GTAEE76 pKa = 3.91YY77 pKa = 10.47GDD79 pKa = 3.98SVVCRR84 pKa = 11.84VNGLPDD90 pKa = 3.79EE91 pKa = 4.38EE92 pKa = 5.9AEE94 pKa = 4.46PCTGMPAADD103 pKa = 4.59AYY105 pKa = 9.2WAFYY109 pKa = 9.2MATDD113 pKa = 4.66GAPWQYY119 pKa = 10.89AQSGVSEE126 pKa = 4.18QVLEE130 pKa = 4.43EE131 pKa = 4.32GDD133 pKa = 4.23FVALSFQEE141 pKa = 4.64GGEE144 pKa = 4.19SLPTVAADD152 pKa = 3.38AQLRR156 pKa = 11.84ADD158 pKa = 3.66AHH160 pKa = 6.61APASDD165 pKa = 3.91ANAADD170 pKa = 4.21DD171 pKa = 4.45PEE173 pKa = 4.21AHH175 pKa = 5.97EE176 pKa = 4.64TADD179 pKa = 3.61EE180 pKa = 4.42ADD182 pKa = 4.64DD183 pKa = 4.41GGADD187 pKa = 3.55LGLVIGIIVLLAVIGAAAVILARR210 pKa = 11.84RR211 pKa = 11.84RR212 pKa = 11.84PSAA215 pKa = 3.39

Molecular weight: 21.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N6Z439|A0A3N6Z439_9ACTN XRE family transcriptional regulator OS=Aeromicrobium camelliae OX=1538144 GN=EHW97_15040 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 9.97KK16 pKa = 9.33HH17 pKa = 4.25GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AIISSRR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.86GRR40 pKa = 11.84AKK42 pKa = 10.43LAAA45 pKa = 4.52

Molecular weight: 5.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2929

0

2929

930471

33

3018

317.7

34.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.035 ± 0.058

0.63 ± 0.013

6.415 ± 0.04

6.206 ± 0.045

2.942 ± 0.025

8.865 ± 0.038

2.133 ± 0.022

4.193 ± 0.03

1.906 ± 0.03

10.176 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.895 ± 0.018

1.79 ± 0.023

5.349 ± 0.027

2.912 ± 0.024

7.676 ± 0.05

5.256 ± 0.026

5.891 ± 0.035

9.335 ± 0.045

1.459 ± 0.019

1.933 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski