Avibacterium endocarditidis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Avibacterium

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1713 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S5AGJ4|A0A2S5AGJ4_9PAST 3-dehydroquinate synthase OS=Avibacterium endocarditidis OX=380674 GN=aroB PE=3 SV=1
MM1 pKa = 6.88ITSPEE6 pKa = 4.18DD7 pKa = 3.26NAQPLQLAQTEE18 pKa = 4.66LKK20 pKa = 10.88NGTTEE25 pKa = 4.1QVLLGWGFEE34 pKa = 4.36SHH36 pKa = 7.22TDD38 pKa = 3.77TEE40 pKa = 4.87WEE42 pKa = 4.86GSCWWLLSNAAEE54 pKa = 4.28EE55 pKa = 4.4NTLTTSAVQNSPNFSTALSFSSISAQLPAEE85 pKa = 4.78HH86 pKa = 6.6YY87 pKa = 10.53LQFGLDD93 pKa = 3.43IGNLSDD99 pKa = 3.53

Molecular weight: 10.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S5AKI3|A0A2S5AKI3_9PAST PTS trehalose transporter subunit IIBC OS=Avibacterium endocarditidis OX=380674 GN=C3Z13_01265 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84SRR14 pKa = 11.84THH16 pKa = 6.4GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1713

0

1713

465782

21

2405

271.9

30.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.682 ± 0.063

1.063 ± 0.021

4.943 ± 0.045

6.232 ± 0.062

4.326 ± 0.047

6.733 ± 0.066

2.101 ± 0.031

6.743 ± 0.06

5.913 ± 0.047

10.593 ± 0.078

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.439 ± 0.031

4.713 ± 0.038

3.945 ± 0.037

5.369 ± 0.073

4.453 ± 0.045

5.641 ± 0.044

5.084 ± 0.04

6.611 ± 0.061

1.21 ± 0.025

3.204 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski