Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_319

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.756AlaAla: 4.756 ± 3.009
0.0AlaCys: 0.0 ± 0.0
2.378AlaAsp: 2.378 ± 2.012
1.784AlaGlu: 1.784 ± 2.175
3.567AlaPhe: 3.567 ± 1.399
3.567AlaGly: 3.567 ± 1.575
1.784AlaHis: 1.784 ± 1.306
1.189AlaIle: 1.189 ± 1.45
4.162AlaLys: 4.162 ± 3.201
4.162AlaLeu: 4.162 ± 0.728
2.378AlaMet: 2.378 ± 1.289
3.567AlaAsn: 3.567 ± 2.083
2.973AlaPro: 2.973 ± 1.536
4.162AlaGln: 4.162 ± 4.519
0.0AlaArg: 0.0 ± 0.0
4.756AlaSer: 4.756 ± 2.066
1.189AlaThr: 1.189 ± 0.871
1.189AlaVal: 1.189 ± 0.645
0.595AlaTrp: 0.595 ± 0.725
2.378AlaTyr: 2.378 ± 0.343
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
1.189CysGlu: 1.189 ± 0.456
2.378CysPhe: 2.378 ± 0.912
1.189CysGly: 1.189 ± 0.456
0.595CysHis: 0.595 ± 0.53
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
0.595CysLeu: 0.595 ± 0.53
0.0CysMet: 0.0 ± 0.0
0.595CysAsn: 0.595 ± 0.435
1.189CysPro: 1.189 ± 1.061
1.189CysGln: 1.189 ± 0.645
0.0CysArg: 0.0 ± 0.0
1.784CysSer: 1.784 ± 0.716
1.189CysThr: 1.189 ± 0.456
0.595CysVal: 0.595 ± 0.53
0.0CysTrp: 0.0 ± 0.0
0.595CysTyr: 0.595 ± 0.435
0.0CysXaa: 0.0 ± 0.0
Asp
4.162AspAla: 4.162 ± 2.031
1.189AspCys: 1.189 ± 1.061
2.378AspAsp: 2.378 ± 0.932
1.189AspGlu: 1.189 ± 0.645
4.756AspPhe: 4.756 ± 2.196
5.945AspGly: 5.945 ± 3.815
0.0AspHis: 0.0 ± 0.0
4.756AspIle: 4.756 ± 1.508
2.973AspLys: 2.973 ± 1.907
5.351AspLeu: 5.351 ± 1.965
1.189AspMet: 1.189 ± 0.456
4.756AspAsn: 4.756 ± 1.472
0.0AspPro: 0.0 ± 0.0
0.595AspGln: 0.595 ± 0.435
1.189AspArg: 1.189 ± 0.456
8.918AspSer: 8.918 ± 2.52
1.189AspThr: 1.189 ± 0.645
2.973AspVal: 2.973 ± 1.002
0.0AspTrp: 0.0 ± 0.0
5.351AspTyr: 5.351 ± 1.282
0.0AspXaa: 0.0 ± 0.0
Glu
3.567GluAla: 3.567 ± 1.156
0.595GluCys: 0.595 ± 0.53
2.378GluAsp: 2.378 ± 1.195
4.162GluGlu: 4.162 ± 1.847
5.351GluPhe: 5.351 ± 2.027
2.973GluGly: 2.973 ± 0.879
0.595GluHis: 0.595 ± 0.435
1.189GluIle: 1.189 ± 0.645
1.189GluLys: 1.189 ± 1.45
1.189GluLeu: 1.189 ± 0.871
0.0GluMet: 0.0 ± 0.0
1.784GluAsn: 1.784 ± 2.175
0.0GluPro: 0.0 ± 0.0
0.0GluGln: 0.0 ± 0.0
1.189GluArg: 1.189 ± 0.697
3.567GluSer: 3.567 ± 1.513
4.162GluThr: 4.162 ± 2.042
2.973GluVal: 2.973 ± 0.336
0.595GluTrp: 0.595 ± 0.53
2.973GluTyr: 2.973 ± 1.981
0.0GluXaa: 0.0 ± 0.0
Phe
2.378PheAla: 2.378 ± 0.343
2.378PheCys: 2.378 ± 1.094
5.351PheAsp: 5.351 ± 1.695
5.945PheGlu: 5.945 ± 0.917
4.756PhePhe: 4.756 ± 2.189
2.973PheGly: 2.973 ± 0.709
1.189PheHis: 1.189 ± 0.888
6.54PheIle: 6.54 ± 2.09
4.756PheLys: 4.756 ± 0.686
3.567PheLeu: 3.567 ± 0.77
0.0PheMet: 0.0 ± 0.0
7.134PheAsn: 7.134 ± 3.052
2.378PhePro: 2.378 ± 1.094
1.189PheGln: 1.189 ± 0.888
2.378PheArg: 2.378 ± 0.912
4.162PheSer: 4.162 ± 1.339
2.973PheThr: 2.973 ± 1.308
3.567PheVal: 3.567 ± 1.433
0.0PheTrp: 0.0 ± 0.0
2.378PheTyr: 2.378 ± 0.912
0.0PheXaa: 0.0 ± 0.0
Gly
1.784GlyAla: 1.784 ± 2.175
0.595GlyCys: 0.595 ± 0.53
3.567GlyAsp: 3.567 ± 1.433
2.973GlyGlu: 2.973 ± 1.504
4.162GlyPhe: 4.162 ± 0.728
4.756GlyGly: 4.756 ± 1.164
0.0GlyHis: 0.0 ± 0.0
2.973GlyIle: 2.973 ± 1.002
5.945GlyLys: 5.945 ± 1.587
7.729GlyLeu: 7.729 ± 1.78
0.595GlyMet: 0.595 ± 0.725
2.378GlyAsn: 2.378 ± 2.901
1.784GlyPro: 1.784 ± 1.004
1.189GlyGln: 1.189 ± 0.645
0.595GlyArg: 0.595 ± 0.435
9.512GlySer: 9.512 ± 4.08
2.973GlyThr: 2.973 ± 1.504
4.162GlyVal: 4.162 ± 0.728
0.0GlyTrp: 0.0 ± 0.0
5.351GlyTyr: 5.351 ± 1.695
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
1.189HisAsp: 1.189 ± 1.061
0.595HisGlu: 0.595 ± 0.435
0.595HisPhe: 0.595 ± 0.53
1.189HisGly: 1.189 ± 0.456
0.0HisHis: 0.0 ± 0.0
1.784HisIle: 1.784 ± 1.306
0.595HisLys: 0.595 ± 0.53
1.784HisLeu: 1.784 ± 0.888
0.0HisMet: 0.0 ± 0.0
0.595HisAsn: 0.595 ± 0.435
0.595HisPro: 0.595 ± 0.435
2.378HisGln: 2.378 ± 0.932
1.189HisArg: 1.189 ± 1.061
0.0HisSer: 0.0 ± 0.0
0.595HisThr: 0.595 ± 0.435
3.567HisVal: 3.567 ± 1.776
0.595HisTrp: 0.595 ± 0.435
3.567HisTyr: 3.567 ± 0.835
0.0HisXaa: 0.0 ± 0.0
Ile
1.189IleAla: 1.189 ± 1.45
0.0IleCys: 0.0 ± 0.0
3.567IleAsp: 3.567 ± 1.64
1.189IleGlu: 1.189 ± 1.45
2.973IlePhe: 2.973 ± 1.119
2.378IleGly: 2.378 ± 1.154
1.784IleHis: 1.784 ± 0.716
1.784IleIle: 1.784 ± 0.716
4.756IleLys: 4.756 ± 2.066
4.162IleLeu: 4.162 ± 0.671
0.0IleMet: 0.0 ± 0.0
5.351IleAsn: 5.351 ± 2.194
0.595IlePro: 0.595 ± 0.435
1.189IleGln: 1.189 ± 0.456
3.567IleArg: 3.567 ± 1.776
10.107IleSer: 10.107 ± 1.426
1.784IleThr: 1.784 ± 1.046
1.784IleVal: 1.784 ± 1.214
0.595IleTrp: 0.595 ± 0.53
2.973IleTyr: 2.973 ± 1.119
0.0IleXaa: 0.0 ± 0.0
Lys
4.162LysAla: 4.162 ± 1.354
0.595LysCys: 0.595 ± 0.435
2.378LysAsp: 2.378 ± 0.609
1.784LysGlu: 1.784 ± 1.004
2.973LysPhe: 2.973 ± 1.119
3.567LysGly: 3.567 ± 1.367
0.0LysHis: 0.0 ± 0.0
4.162LysIle: 4.162 ± 1.552
1.189LysLys: 1.189 ± 0.697
5.945LysLeu: 5.945 ± 2.004
0.595LysMet: 0.595 ± 0.725
6.54LysAsn: 6.54 ± 1.298
2.378LysPro: 2.378 ± 2.122
2.378LysGln: 2.378 ± 1.06
4.756LysArg: 4.756 ± 1.823
5.351LysSer: 5.351 ± 1.686
2.378LysThr: 2.378 ± 0.609
3.567LysVal: 3.567 ± 0.819
1.189LysTrp: 1.189 ± 1.45
2.973LysTyr: 2.973 ± 1.907
0.0LysXaa: 0.0 ± 0.0
Leu
4.756LeuAla: 4.756 ± 1.164
0.0LeuCys: 0.0 ± 0.0
4.162LeuAsp: 4.162 ± 1.339
1.784LeuGlu: 1.784 ± 0.334
5.945LeuPhe: 5.945 ± 0.673
13.08LeuGly: 13.08 ± 3.469
1.189LeuHis: 1.189 ± 0.871
3.567LeuIle: 3.567 ± 2.09
6.54LeuLys: 6.54 ± 2.64
7.134LeuLeu: 7.134 ± 2.251
0.0LeuMet: 0.0 ± 0.0
6.54LeuAsn: 6.54 ± 1.83
5.351LeuPro: 5.351 ± 1.711
4.162LeuGln: 4.162 ± 1.693
1.189LeuArg: 1.189 ± 0.456
11.296LeuSer: 11.296 ± 2.367
4.756LeuThr: 4.756 ± 1.322
6.54LeuVal: 6.54 ± 2.202
1.189LeuTrp: 1.189 ± 1.061
3.567LeuTyr: 3.567 ± 1.776
0.0LeuXaa: 0.0 ± 0.0
Met
0.595MetAla: 0.595 ± 0.725
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
0.0MetGlu: 0.0 ± 0.0
1.189MetPhe: 1.189 ± 0.456
0.595MetGly: 0.595 ± 0.725
0.595MetHis: 0.595 ± 0.435
0.0MetIle: 0.0 ± 0.0
1.189MetLys: 1.189 ± 1.222
1.784MetLeu: 1.784 ± 1.301
0.595MetMet: 0.595 ± 0.725
0.595MetAsn: 0.595 ± 0.725
0.595MetPro: 0.595 ± 0.53
1.189MetGln: 1.189 ± 0.645
1.189MetArg: 1.189 ± 0.645
1.189MetSer: 1.189 ± 0.697
0.0MetThr: 0.0 ± 0.0
2.973MetVal: 2.973 ± 0.879
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.973AsnAla: 2.973 ± 0.336
0.595AsnCys: 0.595 ± 0.435
2.973AsnAsp: 2.973 ± 1.536
4.756AsnGlu: 4.756 ± 3.036
5.945AsnPhe: 5.945 ± 1.688
1.189AsnGly: 1.189 ± 0.697
1.189AsnHis: 1.189 ± 0.697
5.351AsnIle: 5.351 ± 3.73
2.973AsnLys: 2.973 ± 0.76
5.351AsnLeu: 5.351 ± 1.003
0.595AsnMet: 0.595 ± 0.725
5.351AsnAsn: 5.351 ± 1.695
4.162AsnPro: 4.162 ± 1.094
1.189AsnGln: 1.189 ± 1.222
2.973AsnArg: 2.973 ± 0.336
10.107AsnSer: 10.107 ± 1.946
4.162AsnThr: 4.162 ± 2.356
8.918AsnVal: 8.918 ± 2.787
0.595AsnTrp: 0.595 ± 0.435
4.756AsnTyr: 4.756 ± 0.686
0.0AsnXaa: 0.0 ± 0.0
Pro
0.595ProAla: 0.595 ± 0.725
1.784ProCys: 1.784 ± 1.591
1.784ProAsp: 1.784 ± 0.827
1.189ProGlu: 1.189 ± 0.456
0.595ProPhe: 0.595 ± 0.53
0.0ProGly: 0.0 ± 0.0
1.189ProHis: 1.189 ± 0.456
1.189ProIle: 1.189 ± 0.888
2.378ProLys: 2.378 ± 0.912
6.54ProLeu: 6.54 ± 2.71
0.0ProMet: 0.0 ± 0.0
2.973ProAsn: 2.973 ± 1.504
2.378ProPro: 2.378 ± 0.609
2.378ProGln: 2.378 ± 0.912
2.378ProArg: 2.378 ± 1.39
4.162ProSer: 4.162 ± 0.858
3.567ProThr: 3.567 ± 1.445
2.973ProVal: 2.973 ± 1.418
1.189ProTrp: 1.189 ± 0.456
2.378ProTyr: 2.378 ± 0.912
0.0ProXaa: 0.0 ± 0.0
Gln
2.378GlnAla: 2.378 ± 2.012
0.595GlnCys: 0.595 ± 0.435
2.973GlnAsp: 2.973 ± 1.092
1.189GlnGlu: 1.189 ± 1.45
1.189GlnPhe: 1.189 ± 0.871
2.378GlnGly: 2.378 ± 1.06
1.784GlnHis: 1.784 ± 0.716
2.973GlnIle: 2.973 ± 2.221
1.784GlnLys: 1.784 ± 0.888
4.756GlnLeu: 4.756 ± 1.588
1.189GlnMet: 1.189 ± 1.45
4.162GlnAsn: 4.162 ± 2.591
0.0GlnPro: 0.0 ± 0.0
0.0GlnGln: 0.0 ± 0.0
1.784GlnArg: 1.784 ± 1.301
1.189GlnSer: 1.189 ± 1.45
0.0GlnThr: 0.0 ± 0.0
0.0GlnVal: 0.0 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
0.595GlnTyr: 0.595 ± 0.435
0.0GlnXaa: 0.0 ± 0.0
Arg
0.595ArgAla: 0.595 ± 0.435
0.595ArgCys: 0.595 ± 0.435
2.973ArgAsp: 2.973 ± 1.092
0.595ArgGlu: 0.595 ± 0.53
4.162ArgPhe: 4.162 ± 1.551
1.784ArgGly: 1.784 ± 1.319
1.189ArgHis: 1.189 ± 1.08
1.784ArgIle: 1.784 ± 0.716
2.973ArgLys: 2.973 ± 1.907
4.162ArgLeu: 4.162 ± 0.858
0.595ArgMet: 0.595 ± 0.725
4.162ArgAsn: 4.162 ± 1.551
1.784ArgPro: 1.784 ± 1.591
1.189ArgGln: 1.189 ± 0.697
0.595ArgArg: 0.595 ± 0.725
2.973ArgSer: 2.973 ± 1.119
0.0ArgThr: 0.0 ± 0.0
1.189ArgVal: 1.189 ± 1.061
0.0ArgTrp: 0.0 ± 0.0
2.973ArgTyr: 2.973 ± 0.336
0.0ArgXaa: 0.0 ± 0.0
Ser
6.54SerAla: 6.54 ± 3.474
0.0SerCys: 0.0 ± 0.0
7.729SerAsp: 7.729 ± 2.623
5.351SerGlu: 5.351 ± 1.766
6.54SerPhe: 6.54 ± 1.201
4.756SerGly: 4.756 ± 2.221
2.973SerHis: 2.973 ± 1.308
5.351SerIle: 5.351 ± 2.027
7.134SerLys: 7.134 ± 1.826
10.702SerLeu: 10.702 ± 2.716
1.784SerMet: 1.784 ± 0.795
7.134SerAsn: 7.134 ± 3.309
5.945SerPro: 5.945 ± 3.014
3.567SerGln: 3.567 ± 1.934
4.162SerArg: 4.162 ± 2.272
13.08SerSer: 13.08 ± 3.567
2.378SerThr: 2.378 ± 0.912
10.107SerVal: 10.107 ± 1.14
0.595SerTrp: 0.595 ± 0.53
5.945SerTyr: 5.945 ± 3.157
0.0SerXaa: 0.0 ± 0.0
Thr
3.567ThrAla: 3.567 ± 2.083
0.595ThrCys: 0.595 ± 0.435
4.756ThrAsp: 4.756 ± 0.829
2.378ThrGlu: 2.378 ± 1.742
1.784ThrPhe: 1.784 ± 0.716
1.784ThrGly: 1.784 ± 1.306
2.378ThrHis: 2.378 ± 1.39
1.189ThrIle: 1.189 ± 0.645
1.784ThrLys: 1.784 ± 0.716
4.162ThrLeu: 4.162 ± 1.798
1.189ThrMet: 1.189 ± 0.429
2.973ThrAsn: 2.973 ± 1.418
1.189ThrPro: 1.189 ± 0.871
0.595ThrGln: 0.595 ± 0.725
2.378ThrArg: 2.378 ± 0.912
2.973ThrSer: 2.973 ± 1.119
0.595ThrThr: 0.595 ± 0.435
0.595ThrVal: 0.595 ± 0.435
1.784ThrTrp: 1.784 ± 0.827
3.567ThrTyr: 3.567 ± 1.433
0.0ThrXaa: 0.0 ± 0.0
Val
3.567ValAla: 3.567 ± 2.477
1.784ValCys: 1.784 ± 1.004
5.945ValAsp: 5.945 ± 1.164
1.784ValGlu: 1.784 ± 0.91
3.567ValPhe: 3.567 ± 1.125
5.945ValGly: 5.945 ± 2.199
1.189ValHis: 1.189 ± 0.456
1.189ValIle: 1.189 ± 0.456
0.595ValLys: 0.595 ± 0.53
4.162ValLeu: 4.162 ± 1.693
1.784ValMet: 1.784 ± 1.319
3.567ValAsn: 3.567 ± 0.77
5.945ValPro: 5.945 ± 2.238
0.595ValGln: 0.595 ± 0.725
1.784ValArg: 1.784 ± 1.058
9.512ValSer: 9.512 ± 2.9
3.567ValThr: 3.567 ± 1.925
4.162ValVal: 4.162 ± 1.551
1.189ValTrp: 1.189 ± 1.061
1.784ValTyr: 1.784 ± 0.716
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.595TrpCys: 0.595 ± 0.435
0.0TrpAsp: 0.0 ± 0.0
0.595TrpGlu: 0.595 ± 0.725
1.784TrpPhe: 1.784 ± 0.888
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.595TrpLys: 0.595 ± 0.53
1.784TrpLeu: 1.784 ± 0.716
0.595TrpMet: 0.595 ± 0.551
0.595TrpAsn: 0.595 ± 0.725
0.0TrpPro: 0.0 ± 0.0
1.189TrpGln: 1.189 ± 0.697
0.595TrpArg: 0.595 ± 0.435
0.595TrpSer: 0.595 ± 0.53
0.0TrpThr: 0.0 ± 0.0
0.595TrpVal: 0.595 ± 0.53
0.0TrpTrp: 0.0 ± 0.0
0.595TrpTyr: 0.595 ± 0.53
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.973TyrAla: 2.973 ± 0.709
1.189TyrCys: 1.189 ± 0.456
2.378TyrAsp: 2.378 ± 0.912
0.0TyrGlu: 0.0 ± 0.0
1.784TyrPhe: 1.784 ± 0.888
2.973TyrGly: 2.973 ± 1.934
1.189TyrHis: 1.189 ± 1.061
4.756TyrIle: 4.756 ± 1.823
5.351TyrLys: 5.351 ± 0.424
7.729TyrLeu: 7.729 ± 3.495
0.595TyrMet: 0.595 ± 0.435
5.351TyrAsn: 5.351 ± 0.882
2.378TyrPro: 2.378 ± 1.094
0.595TyrGln: 0.595 ± 0.725
2.378TyrArg: 2.378 ± 0.609
7.134TyrSer: 7.134 ± 1.67
4.756TyrThr: 4.756 ± 2.189
1.189TyrVal: 1.189 ± 0.456
0.0TyrTrp: 0.0 ± 0.0
2.378TyrTyr: 2.378 ± 1.742
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (1683 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski