Arenibacter nanhaiticus

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Arenibacter

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3553 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M6I4C6|A0A1M6I4C6_9FLAO Glycerol kinase OS=Arenibacter nanhaiticus OX=558155 GN=glpK PE=3 SV=1
MM1 pKa = 7.18EE2 pKa = 5.06HH3 pKa = 6.91SISIFAFKK11 pKa = 10.44KK12 pKa = 9.57SSCSGTLGKK21 pKa = 10.68LFFLGFFLLTSLSFAQQADD40 pKa = 3.79LRR42 pKa = 11.84SHH44 pKa = 4.52VTEE47 pKa = 4.79GQDD50 pKa = 3.28CTSNDD55 pKa = 3.21VQLISAQLSSEE66 pKa = 4.05EE67 pKa = 4.55CTTCSPGDD75 pKa = 3.64ILVVDD80 pKa = 4.26LLITVRR86 pKa = 11.84HH87 pKa = 5.12NTNSVRR93 pKa = 11.84PSLAVFGDD101 pKa = 4.24LTTTLPDD108 pKa = 3.78GSSTTSVFTEE118 pKa = 4.22CGGPIIPKK126 pKa = 10.31DD127 pKa = 3.41KK128 pKa = 10.41VLNGIPVDD136 pKa = 3.4KK137 pKa = 10.43GGNGIQTIKK146 pKa = 10.22YY147 pKa = 7.94GQVSYY152 pKa = 10.95ICGSKK157 pKa = 11.03LEE159 pKa = 4.02VDD161 pKa = 4.45NILVAWTVPPDD172 pKa = 4.12GGCPIADD179 pKa = 3.89ASPHH183 pKa = 5.99PKK185 pKa = 10.21CGFQEE190 pKa = 4.52GSLIIIPPLHH200 pKa = 6.91AIAEE204 pKa = 4.41AFCTPEE210 pKa = 3.78NYY212 pKa = 9.38IDD214 pKa = 4.19LEE216 pKa = 4.72AIGGSAPYY224 pKa = 9.69TYY226 pKa = 10.54DD227 pKa = 2.71WKK229 pKa = 11.13GPNGFTSTDD238 pKa = 3.08EE239 pKa = 4.44DD240 pKa = 4.51LFGVLPGNYY249 pKa = 9.29DD250 pKa = 3.46VTVTDD255 pKa = 5.25SKK257 pKa = 11.33GCSINTSVTKK267 pKa = 10.52IKK269 pKa = 10.5CCEE272 pKa = 3.94FFATPNLDD280 pKa = 3.17SSEE283 pKa = 4.03QNIEE287 pKa = 3.95GCDD290 pKa = 3.78VSDD293 pKa = 4.52LPSPFTDD300 pKa = 3.58PEE302 pKa = 4.31NVFTDD307 pKa = 3.28ITEE310 pKa = 4.33NPCGNLIMHH319 pKa = 6.68QSDD322 pKa = 3.38ILNGNLCTGGLIINRR337 pKa = 11.84TYY339 pKa = 11.2TLFDD343 pKa = 4.46DD344 pKa = 5.12LNNNNTLDD352 pKa = 3.68SGEE355 pKa = 4.23EE356 pKa = 3.93FAVSYY361 pKa = 10.7QNFRR365 pKa = 11.84IIDD368 pKa = 3.63TTLPTFNTPLPEE380 pKa = 5.17DD381 pKa = 3.42STAAFDD387 pKa = 5.21NIPSPPTLSANDD399 pKa = 3.55NCDD402 pKa = 3.79DD403 pKa = 4.03NVSVTLVEE411 pKa = 4.38TYY413 pKa = 10.37IGDD416 pKa = 4.07STSTTYY422 pKa = 10.61TIVRR426 pKa = 11.84TWTASDD432 pKa = 3.68CAGNEE437 pKa = 4.35TVHH440 pKa = 5.34TQYY443 pKa = 10.95IYY445 pKa = 9.79VTEE448 pKa = 4.34NGDD451 pKa = 4.23PIGLKK456 pKa = 10.35INDD459 pKa = 3.69VTVDD463 pKa = 3.47EE464 pKa = 5.08ADD466 pKa = 3.28NTAVFTVTLTGRR478 pKa = 11.84VSGGFNVDD486 pKa = 3.65YY487 pKa = 11.36NSVNQTAIAPNDD499 pKa = 3.4FTAIGITSLSFSGNHH514 pKa = 5.81GEE516 pKa = 4.3KK517 pKa = 9.17KK518 pKa = 9.17TISVSIKK525 pKa = 9.3EE526 pKa = 4.17DD527 pKa = 3.24QFVEE531 pKa = 4.08DD532 pKa = 5.52DD533 pKa = 3.55EE534 pKa = 4.98TFTIDD539 pKa = 5.04LSNLSTTEE547 pKa = 3.51IPINKK552 pKa = 8.49ATGTGTIIDD561 pKa = 4.32NDD563 pKa = 3.92SATISITDD571 pKa = 3.43MEE573 pKa = 4.84INEE576 pKa = 4.22GTGIFNIQVTLIGKK590 pKa = 6.38TQDD593 pKa = 2.98PFTINFSTADD603 pKa = 3.37GSAIKK608 pKa = 10.59VDD610 pKa = 4.58DD611 pKa = 3.82YY612 pKa = 12.01VEE614 pKa = 5.17AIGQITFPANSTNGTVQNISLEE636 pKa = 4.34VIDD639 pKa = 5.5DD640 pKa = 4.31NIIEE644 pKa = 4.26FTEE647 pKa = 4.01NFLVNLNSISGFGDD661 pKa = 2.87ISFLDD666 pKa = 3.53NQANIDD672 pKa = 4.31IIDD675 pKa = 3.76NDD677 pKa = 4.88AITGTGISFDD687 pKa = 3.63NTNVIVNEE695 pKa = 4.23DD696 pKa = 3.32AGTAIFTVRR705 pKa = 11.84LTGQVFGGFTLDD717 pKa = 3.54YY718 pKa = 8.29TTEE721 pKa = 4.11NVTAMAGSDD730 pKa = 3.47YY731 pKa = 10.31TAEE734 pKa = 4.03SGKK737 pKa = 10.94LNFAGNDD744 pKa = 3.64NEE746 pKa = 4.08FHH748 pKa = 6.45TIEE751 pKa = 4.52VPIIDD756 pKa = 4.45DD757 pKa = 3.69TLIEE761 pKa = 4.14PTEE764 pKa = 4.15TFVVNLSNIDD774 pKa = 3.64PAIVSINTAQARR786 pKa = 11.84GTIKK790 pKa = 11.15DD791 pKa = 3.48NDD793 pKa = 3.54ATAGTGVSFKK803 pKa = 10.4NTDD806 pKa = 2.61ITVNEE811 pKa = 4.38DD812 pKa = 2.66AGTATFKK819 pKa = 11.02VVLSGNVQGGFTLDD833 pKa = 3.46YY834 pKa = 8.43TTDD837 pKa = 3.31NGSAVQPDD845 pKa = 5.42DD846 pKa = 3.41YY847 pKa = 11.33TLTYY851 pKa = 9.08DD852 pKa = 3.25TLTFVGNDD860 pKa = 3.79GEE862 pKa = 4.75TKK864 pKa = 10.52DD865 pKa = 3.37ITVPIIDD872 pKa = 5.17DD873 pKa = 3.97LLIEE877 pKa = 4.11PTEE880 pKa = 3.96NFFVKK885 pKa = 10.59LSNLSTSLIGINTPQAKK902 pKa = 10.32GNIIDD907 pKa = 3.93NDD909 pKa = 4.38AIAGTGIAFTNTNVTVTEE927 pKa = 4.22GTDD930 pKa = 2.75AFAIFEE936 pKa = 4.33VTLTGDD942 pKa = 2.61ISEE945 pKa = 4.57NVSVDD950 pKa = 3.13YY951 pKa = 8.25TTIDD955 pKa = 3.3GTALDD960 pKa = 4.3PSDD963 pKa = 4.27YY964 pKa = 10.57LTTTSTITFTPTIKK978 pKa = 10.32SYY980 pKa = 10.36EE981 pKa = 4.0IQVPIMDD988 pKa = 4.72DD989 pKa = 3.97AIIEE993 pKa = 4.13PSEE996 pKa = 4.08AFTVEE1001 pKa = 4.12LSNIQSNLGIGFVDD1015 pKa = 4.74GNATNTATGNILDD1028 pKa = 4.78DD1029 pKa = 4.54DD1030 pKa = 4.55AVGGTGIAFTYY1041 pKa = 10.23TNVTVTEE1048 pKa = 4.24GTDD1051 pKa = 2.99AFAA1054 pKa = 6.04

Molecular weight: 112.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M6A0A3|A0A1M6A0A3_9FLAO Glutamate--tRNA ligase OS=Arenibacter nanhaiticus OX=558155 GN=gltX PE=3 SV=1
MM1 pKa = 7.04TMYY4 pKa = 8.87RR5 pKa = 11.84TSYY8 pKa = 10.4EE9 pKa = 3.91VAQVLEE15 pKa = 4.38RR16 pKa = 11.84NRR18 pKa = 11.84EE19 pKa = 3.89QLAGLCANSWQSRR32 pKa = 11.84TLHH35 pKa = 6.62ALRR38 pKa = 11.84KK39 pKa = 9.5CRR41 pKa = 11.84TAALGGHH48 pKa = 7.01IDD50 pKa = 3.39RR51 pKa = 11.84CDD53 pKa = 3.33NPGCHH58 pKa = 6.95KK59 pKa = 10.79LHH61 pKa = 6.88LSYY64 pKa = 11.02NSCRR68 pKa = 11.84NRR70 pKa = 11.84HH71 pKa = 5.34CPKK74 pKa = 10.24CQGHH78 pKa = 6.77KK79 pKa = 9.45RR80 pKa = 11.84EE81 pKa = 3.69QWIRR85 pKa = 11.84ARR87 pKa = 11.84EE88 pKa = 4.01AEE90 pKa = 4.5LLNVTYY96 pKa = 10.04FHH98 pKa = 6.75MVFTLPSEE106 pKa = 4.28LNRR109 pKa = 11.84MCLYY113 pKa = 10.38DD114 pKa = 3.75PKK116 pKa = 10.77SIYY119 pKa = 10.89GLLFGTAWQVIKK131 pKa = 10.87GFSSNPKK138 pKa = 10.02FLGADD143 pKa = 3.32PGMVAILHH151 pKa = 6.06SWGQNLSLHH160 pKa = 6.08PHH162 pKa = 5.95LHH164 pKa = 6.6CIVPGGGTTRR174 pKa = 11.84SGKK177 pKa = 9.11WKK179 pKa = 9.77FARR182 pKa = 11.84NKK184 pKa = 9.96GKK186 pKa = 9.61PGCRR190 pKa = 11.84KK191 pKa = 9.43ARR193 pKa = 11.84YY194 pKa = 8.26LFPVKK199 pKa = 10.55AMSKK203 pKa = 8.25VFRR206 pKa = 11.84ARR208 pKa = 11.84FVASLRR214 pKa = 11.84KK215 pKa = 9.22EE216 pKa = 4.31FPPHH220 pKa = 5.26PTAFYY225 pKa = 11.01EE226 pKa = 4.95NLFKK230 pKa = 11.12HH231 pKa = 5.64NWVIYY236 pKa = 8.98CKK238 pKa = 10.32RR239 pKa = 11.84PFLGPEE245 pKa = 3.69QVVEE249 pKa = 3.68YY250 pKa = 10.34LGRR253 pKa = 11.84YY254 pKa = 3.88THH256 pKa = 7.36KK257 pKa = 10.47IAISNHH263 pKa = 5.96RR264 pKa = 11.84IKK266 pKa = 11.04SLDD269 pKa = 3.48NNNVTFTVKK278 pKa = 10.4DD279 pKa = 3.68YY280 pKa = 11.17RR281 pKa = 11.84HH282 pKa = 6.47GGRR285 pKa = 11.84KK286 pKa = 9.05SLLRR290 pKa = 11.84LTDD293 pKa = 3.21AEE295 pKa = 4.29FVRR298 pKa = 11.84RR299 pKa = 11.84FALHH303 pKa = 6.73ILPKK307 pKa = 8.86GFVRR311 pKa = 11.84IRR313 pKa = 11.84HH314 pKa = 5.2YY315 pKa = 11.2GILSSSRR322 pKa = 11.84KK323 pKa = 9.3KK324 pKa = 10.78ALLPLLQQVLGGPVPNGRR342 pKa = 11.84PPLKK346 pKa = 10.12HH347 pKa = 6.24RR348 pKa = 11.84RR349 pKa = 11.84CPYY352 pKa = 8.31CQIGIMVTVAVFDD365 pKa = 3.83SRR367 pKa = 11.84GPPKK371 pKa = 10.42AWSDD375 pKa = 3.52RR376 pKa = 11.84LKK378 pKa = 11.13NSAPRR383 pKa = 11.84RR384 pKa = 11.84TPQKK388 pKa = 10.74AA389 pKa = 2.8

Molecular weight: 44.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3553

0

3553

1230055

34

2809

346.2

38.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.643 ± 0.034

0.728 ± 0.012

5.5 ± 0.029

6.582 ± 0.037

5.077 ± 0.031

6.738 ± 0.043

1.905 ± 0.024

7.545 ± 0.035

7.606 ± 0.047

9.488 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.275 ± 0.02

5.786 ± 0.039

3.597 ± 0.024

3.434 ± 0.024

3.611 ± 0.024

6.437 ± 0.034

5.66 ± 0.044

6.195 ± 0.034

1.141 ± 0.018

4.055 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski