Amino acid dipepetide frequency for Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea capsiferriformans (strain ES-2))

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	11.97AlaAla: 11.97 ± 0.168	1.23AlaCys: 1.23 ± 0.034	5.519AlaAsp: 5.519 ± 0.079	6.559AlaGlu: 6.559 ± 0.117	3.409AlaPhe: 3.409 ± 0.062	7.83AlaGly: 7.83 ± 0.123	2.382AlaHis: 2.382 ± 0.06	5.993AlaIle: 5.993 ± 0.082	4.368AlaLys: 4.368 ± 0.087	11.655AlaLeu: 11.655 ± 0.147	3.103AlaMet: 3.103 ± 0.057	3.302AlaAsn: 3.302 ± 0.064	3.527AlaPro: 3.527 ± 0.068	4.913AlaGln: 4.913 ± 0.1	6.227AlaArg: 6.227 ± 0.116	5.822AlaSer: 5.822 ± 0.083	4.95AlaThr: 4.95 ± 0.081	7.216AlaVal: 7.216 ± 0.101	1.241AlaTrp: 1.241 ± 0.036	2.461AlaTyr: 2.461 ± 0.056	0.0AlaXaa: 0.0 ± 0.0
Cys	1.018CysAla: 1.018 ± 0.037	0.137CysCys: 0.137 ± 0.013	0.609CysAsp: 0.609 ± 0.025	0.593CysGlu: 0.593 ± 0.024	0.386CysPhe: 0.386 ± 0.02	1.0CysGly: 1.0 ± 0.033	0.38CysHis: 0.38 ± 0.025	0.576CysIle: 0.576 ± 0.025	0.391CysLys: 0.391 ± 0.019	0.988CysLeu: 0.988 ± 0.038	0.238CysMet: 0.238 ± 0.016	0.408CysAsn: 0.408 ± 0.022	0.528CysPro: 0.528 ± 0.027	0.369CysGln: 0.369 ± 0.023	0.655CysArg: 0.655 ± 0.028	0.656CysSer: 0.656 ± 0.029	0.575CysThr: 0.575 ± 0.025	0.737CysVal: 0.737 ± 0.028	0.137CysTrp: 0.137 ± 0.013	0.318CysTyr: 0.318 ± 0.023	0.0CysXaa: 0.0 ± 0.0
Asp	5.926AspAla: 5.926 ± 0.08	0.552AspCys: 0.552 ± 0.027	2.778AspAsp: 2.778 ± 0.06	3.925AspGlu: 3.925 ± 0.076	2.291AspPhe: 2.291 ± 0.051	3.912AspGly: 3.912 ± 0.074	1.069AspHis: 1.069 ± 0.033	3.356AspIle: 3.356 ± 0.058	2.58AspLys: 2.58 ± 0.053	5.092AspLeu: 5.092 ± 0.074	1.468AspMet: 1.468 ± 0.039	1.778AspAsn: 1.778 ± 0.046	2.115AspPro: 2.115 ± 0.044	1.918AspGln: 1.918 ± 0.042	2.717AspArg: 2.717 ± 0.059	2.849AspSer: 2.849 ± 0.054	2.702AspThr: 2.702 ± 0.061	3.833AspVal: 3.833 ± 0.076	0.867AspTrp: 0.867 ± 0.03	1.733AspTyr: 1.733 ± 0.042	0.0AspXaa: 0.0 ± 0.0
Glu	6.433GluAla: 6.433 ± 0.128	0.509GluCys: 0.509 ± 0.023	2.415GluAsp: 2.415 ± 0.057	3.121GluGlu: 3.121 ± 0.08	2.314GluPhe: 2.314 ± 0.055	3.43GluGly: 3.43 ± 0.064	1.583GluHis: 1.583 ± 0.049	4.007GluIle: 4.007 ± 0.069	3.237GluLys: 3.237 ± 0.067	6.801GluLeu: 6.801 ± 0.094	1.781GluMet: 1.781 ± 0.046	2.171GluAsn: 2.171 ± 0.047	1.802GluPro: 1.802 ± 0.051	3.293GluGln: 3.293 ± 0.116	3.871GluArg: 3.871 ± 0.07	3.382GluSer: 3.382 ± 0.055	2.859GluThr: 2.859 ± 0.053	4.253GluVal: 4.253 ± 0.078	0.77GluTrp: 0.77 ± 0.03	1.513GluTyr: 1.513 ± 0.042	0.0GluXaa: 0.0 ± 0.0
Phe	3.882PheAla: 3.882 ± 0.069	0.44PheCys: 0.44 ± 0.019	2.597PheAsp: 2.597 ± 0.052	2.308PheGlu: 2.308 ± 0.051	1.576PhePhe: 1.576 ± 0.048	3.082PheGly: 3.082 ± 0.06	0.8PheHis: 0.8 ± 0.031	2.201PheIle: 2.201 ± 0.055	1.628PheLys: 1.628 ± 0.042	3.367PheLeu: 3.367 ± 0.068	0.924PheMet: 0.924 ± 0.031	1.496PheAsn: 1.496 ± 0.037	1.475PhePro: 1.475 ± 0.043	1.106PheGln: 1.106 ± 0.033	1.823PheArg: 1.823 ± 0.045	2.83PheSer: 2.83 ± 0.054	1.909PheThr: 1.909 ± 0.051	2.717PheVal: 2.717 ± 0.063	0.446PheTrp: 0.446 ± 0.022	1.12PheTyr: 1.12 ± 0.033	0.0PheXaa: 0.0 ± 0.0
Gly	6.267GlyAla: 6.267 ± 0.115	0.978GlyCys: 0.978 ± 0.035	3.647GlyAsp: 3.647 ± 0.073	4.458GlyGlu: 4.458 ± 0.066	3.021GlyPhe: 3.021 ± 0.057	5.163GlyGly: 5.163 ± 0.101	1.786GlyHis: 1.786 ± 0.042	4.7GlyIle: 4.7 ± 0.076	3.863GlyLys: 3.863 ± 0.078	7.324GlyLeu: 7.324 ± 0.1	2.53GlyMet: 2.53 ± 0.058	2.575GlyAsn: 2.575 ± 0.077	1.513GlyPro: 1.513 ± 0.041	2.665GlyGln: 2.665 ± 0.046	4.308GlyArg: 4.308 ± 0.071	4.148GlySer: 4.148 ± 0.068	3.476GlyThr: 3.476 ± 0.076	5.654GlyVal: 5.654 ± 0.088	1.063GlyTrp: 1.063 ± 0.036	2.389GlyTyr: 2.389 ± 0.053	0.0GlyXaa: 0.0 ± 0.0
His	2.45HisAla: 2.45 ± 0.057	0.32HisCys: 0.32 ± 0.018	1.385HisAsp: 1.385 ± 0.043	1.361HisGlu: 1.361 ± 0.039	1.025HisPhe: 1.025 ± 0.033	1.89HisGly: 1.89 ± 0.052	0.796HisHis: 0.796 ± 0.036	1.363HisIle: 1.363 ± 0.038	0.863HisLys: 0.863 ± 0.032	2.491HisLeu: 2.491 ± 0.054	0.483HisMet: 0.483 ± 0.021	0.768HisAsn: 0.768 ± 0.03	1.441HisPro: 1.441 ± 0.044	1.01HisGln: 1.01 ± 0.034	1.339HisArg: 1.339 ± 0.04	1.291HisSer: 1.291 ± 0.039	1.163HisThr: 1.163 ± 0.032	1.379HisVal: 1.379 ± 0.046	0.333HisTrp: 0.333 ± 0.019	0.828HisTyr: 0.828 ± 0.026	0.0HisXaa: 0.0 ± 0.0
Ile	6.869IleAla: 6.869 ± 0.085	0.622IleCys: 0.622 ± 0.028	3.409IleAsp: 3.409 ± 0.059	4.143IleGlu: 4.143 ± 0.071	1.962IlePhe: 1.962 ± 0.05	4.471IleGly: 4.471 ± 0.085	1.239IleHis: 1.239 ± 0.036	2.892IleIle: 2.892 ± 0.068	2.879IleLys: 2.879 ± 0.061	5.107IleLeu: 5.107 ± 0.091	1.165IleMet: 1.165 ± 0.038	2.419IleAsn: 2.419 ± 0.063	2.584IlePro: 2.584 ± 0.058	1.93IleGln: 1.93 ± 0.053	3.242IleArg: 3.242 ± 0.062	4.161IleSer: 4.161 ± 0.071	3.217IleThr: 3.217 ± 0.063	4.009IleVal: 4.009 ± 0.076	0.6IleTrp: 0.6 ± 0.024	1.378IleTyr: 1.378 ± 0.038	0.0IleXaa: 0.0 ± 0.0
Lys	3.889LysAla: 3.889 ± 0.082	0.315LysCys: 0.315 ± 0.017	1.993LysAsp: 1.993 ± 0.048	2.25LysGlu: 2.25 ± 0.055	1.437LysPhe: 1.437 ± 0.035	2.56LysGly: 2.56 ± 0.049	1.059LysHis: 1.059 ± 0.032	3.053LysIle: 3.053 ± 0.064	2.349LysLys: 2.349 ± 0.056	5.341LysLeu: 5.341 ± 0.088	1.407LysMet: 1.407 ± 0.039	1.99LysAsn: 1.99 ± 0.051	2.322LysPro: 2.322 ± 0.056	2.09LysGln: 2.09 ± 0.051	2.611LysArg: 2.611 ± 0.051	2.87LysSer: 2.87 ± 0.059	2.586LysThr: 2.586 ± 0.054	2.849LysVal: 2.849 ± 0.062	0.491LysTrp: 0.491 ± 0.023	1.081LysTyr: 1.081 ± 0.036	0.0LysXaa: 0.0 ± 0.0
Leu	11.77LeuAla: 11.77 ± 0.139	1.135LeuCys: 1.135 ± 0.036	5.873LeuAsp: 5.873 ± 0.088	5.656LeuGlu: 5.656 ± 0.09	4.107LeuPhe: 4.107 ± 0.077	7.342LeuGly: 7.342 ± 0.106	2.638LeuHis: 2.638 ± 0.056	6.038LeuIle: 6.038 ± 0.097	4.911LeuLys: 4.911 ± 0.076	12.247LeuLeu: 12.247 ± 0.173	2.794LeuMet: 2.794 ± 0.054	4.143LeuAsn: 4.143 ± 0.075	5.389LeuPro: 5.389 ± 0.084	4.392LeuGln: 4.392 ± 0.079	6.534LeuArg: 6.534 ± 0.102	7.728LeuSer: 7.728 ± 0.108	5.94LeuThr: 5.94 ± 0.086	6.749LeuVal: 6.749 ± 0.106	1.171LeuTrp: 1.171 ± 0.041	2.462LeuTyr: 2.462 ± 0.054	0.0LeuXaa: 0.0 ± 0.0
Met	2.654MetAla: 2.654 ± 0.056	0.19MetCys: 0.19 ± 0.014	1.298MetAsp: 1.298 ± 0.034	1.354MetGlu: 1.354 ± 0.043	0.79MetPhe: 0.79 ± 0.033	1.815MetGly: 1.815 ± 0.05	0.672MetHis: 0.672 ± 0.028	1.372MetIle: 1.372 ± 0.042	1.416MetLys: 1.416 ± 0.039	3.177MetLeu: 3.177 ± 0.067	0.726MetMet: 0.726 ± 0.032	1.174MetAsn: 1.174 ± 0.035	1.392MetPro: 1.392 ± 0.041	1.393MetGln: 1.393 ± 0.048	1.812MetArg: 1.812 ± 0.053	1.942MetSer: 1.942 ± 0.035	1.611MetThr: 1.611 ± 0.045	1.772MetVal: 1.772 ± 0.046	0.206MetTrp: 0.206 ± 0.014	0.514MetTyr: 0.514 ± 0.022	0.0MetXaa: 0.0 ± 0.0
Asn	3.491AsnAla: 3.491 ± 0.067	0.435AsnCys: 0.435 ± 0.024	1.908AsnAsp: 1.908 ± 0.052	1.987AsnGlu: 1.987 ± 0.048	1.409AsnPhe: 1.409 ± 0.038	2.732AsnGly: 2.732 ± 0.061	0.806AsnHis: 0.806 ± 0.025	2.096AsnIle: 2.096 ± 0.047	1.588AsnLys: 1.588 ± 0.046	4.023AsnLeu: 4.023 ± 0.072	0.909AsnMet: 0.909 ± 0.033	1.307AsnAsn: 1.307 ± 0.047	2.054AsnPro: 2.054 ± 0.05	1.454AsnGln: 1.454 ± 0.038	2.096AsnArg: 2.096 ± 0.048	1.982AsnSer: 1.982 ± 0.044	1.841AsnThr: 1.841 ± 0.049	2.234AsnVal: 2.234 ± 0.049	0.523AsnTrp: 0.523 ± 0.025	1.048AsnTyr: 1.048 ± 0.036	0.0AsnXaa: 0.0 ± 0.0
Pro	4.449ProAla: 4.449 ± 0.076	0.435ProCys: 0.435 ± 0.029	2.988ProAsp: 2.988 ± 0.061	3.137ProGlu: 3.137 ± 0.061	1.601ProPhe: 1.601 ± 0.042	2.843ProGly: 2.843 ± 0.055	0.969ProHis: 0.969 ± 0.036	1.974ProIle: 1.974 ± 0.047	1.656ProLys: 1.656 ± 0.046	4.373ProLeu: 4.373 ± 0.077	1.031ProMet: 1.031 ± 0.036	1.343ProAsn: 1.343 ± 0.037	1.648ProPro: 1.648 ± 0.04	1.586ProGln: 1.586 ± 0.044	1.818ProArg: 1.818 ± 0.053	2.162ProSer: 2.162 ± 0.048	1.764ProThr: 1.764 ± 0.044	3.921ProVal: 3.921 ± 0.077	0.519ProTrp: 0.519 ± 0.025	1.206ProTyr: 1.206 ± 0.033	0.0ProXaa: 0.0 ± 0.0
Gln	4.719GlnAla: 4.719 ± 0.094	0.359GlnCys: 0.359 ± 0.019	1.961GlnAsp: 1.961 ± 0.048	2.076GlnGlu: 2.076 ± 0.067	1.546GlnPhe: 1.546 ± 0.042	2.857GlnGly: 2.857 ± 0.057	1.157GlnHis: 1.157 ± 0.037	2.517GlnIle: 2.517 ± 0.057	1.742GlnLys: 1.742 ± 0.048	4.885GlnLeu: 4.885 ± 0.088	1.177GlnMet: 1.177 ± 0.032	1.441GlnAsn: 1.441 ± 0.043	1.744GlnPro: 1.744 ± 0.044	2.446GlnGln: 2.446 ± 0.091	2.864GlnArg: 2.864 ± 0.069	2.555GlnSer: 2.555 ± 0.06	2.099GlnThr: 2.099 ± 0.054	2.99GlnVal: 2.99 ± 0.076	0.484GlnTrp: 0.484 ± 0.023	1.056GlnTyr: 1.056 ± 0.034	0.0GlnXaa: 0.0 ± 0.0
Arg	5.602ArgAla: 5.602 ± 0.103	0.591ArgCys: 0.591 ± 0.026	3.301ArgAsp: 3.301 ± 0.07	4.036ArgGlu: 4.036 ± 0.082	2.44ArgPhe: 2.44 ± 0.054	3.573ArgGly: 3.573 ± 0.066	1.551ArgHis: 1.551 ± 0.044	3.883ArgIle: 3.883 ± 0.061	2.374ArgLys: 2.374 ± 0.058	6.669ArgLeu: 6.669 ± 0.087	1.736ArgMet: 1.736 ± 0.046	2.136ArgAsn: 2.136 ± 0.043	2.056ArgPro: 2.056 ± 0.044	2.602ArgGln: 2.602 ± 0.063	3.641ArgArg: 3.641 ± 0.073	3.058ArgSer: 3.058 ± 0.067	2.628ArgThr: 2.628 ± 0.047	4.2ArgVal: 4.2 ± 0.058	0.756ArgTrp: 0.756 ± 0.028	1.937ArgTyr: 1.937 ± 0.051	0.0ArgXaa: 0.0 ± 0.0
Ser	6.173SerAla: 6.173 ± 0.078	0.668SerCys: 0.668 ± 0.029	3.338SerAsp: 3.338 ± 0.061	3.624SerGlu: 3.624 ± 0.067	2.276SerPhe: 2.276 ± 0.045	5.572SerGly: 5.572 ± 0.085	1.392SerHis: 1.392 ± 0.036	3.408SerIle: 3.408 ± 0.073	2.42SerLys: 2.42 ± 0.049	6.359SerLeu: 6.359 ± 0.093	1.619SerMet: 1.619 ± 0.044	2.145SerAsn: 2.145 ± 0.053	2.376SerPro: 2.376 ± 0.053	2.35SerGln: 2.35 ± 0.053	3.535SerArg: 3.535 ± 0.066	3.76SerSer: 3.76 ± 0.074	3.075SerThr: 3.075 ± 0.064	4.48SerVal: 4.48 ± 0.067	0.742SerTrp: 0.742 ± 0.029	1.615SerTyr: 1.615 ± 0.049	0.0SerXaa: 0.0 ± 0.0
Thr	5.009ThrAla: 5.009 ± 0.084	0.485ThrCys: 0.485 ± 0.025	2.785ThrAsp: 2.785 ± 0.052	2.822ThrGlu: 2.822 ± 0.055	1.774ThrPhe: 1.774 ± 0.041	4.335ThrGly: 4.335 ± 0.073	1.321ThrHis: 1.321 ± 0.044	2.658ThrIle: 2.658 ± 0.065	1.603ThrLys: 1.603 ± 0.043	6.448ThrLeu: 6.448 ± 0.105	1.116ThrMet: 1.116 ± 0.034	1.501ThrAsn: 1.501 ± 0.045	2.894ThrPro: 2.894 ± 0.056	2.194ThrGln: 2.194 ± 0.052	2.883ThrArg: 2.883 ± 0.053	2.777ThrSer: 2.777 ± 0.064	2.602ThrThr: 2.602 ± 0.064	3.774ThrVal: 3.774 ± 0.071	0.489ThrTrp: 0.489 ± 0.024	1.228ThrTyr: 1.228 ± 0.039	0.0ThrXaa: 0.0 ± 0.0
Val	7.503ValAla: 7.503 ± 0.102	0.775ValCys: 0.775 ± 0.03	3.726ValAsp: 3.726 ± 0.072	4.318ValGlu: 4.318 ± 0.078	2.657ValPhe: 2.657 ± 0.05	4.493ValGly: 4.493 ± 0.081	1.368ValHis: 1.368 ± 0.039	4.303ValIle: 4.303 ± 0.072	3.176ValLys: 3.176 ± 0.065	7.73ValLeu: 7.73 ± 0.101	2.168ValMet: 2.168 ± 0.048	2.559ValAsn: 2.559 ± 0.055	2.849ValPro: 2.849 ± 0.058	2.76ValGln: 2.76 ± 0.064	4.026ValArg: 4.026 ± 0.067	4.626ValSer: 4.626 ± 0.081	3.854ValThr: 3.854 ± 0.07	5.579ValVal: 5.579 ± 0.091	0.86ValTrp: 0.86 ± 0.033	1.63ValTyr: 1.63 ± 0.041	0.0ValXaa: 0.0 ± 0.0
Trp	0.909TrpAla: 0.909 ± 0.03	0.16TrpCys: 0.16 ± 0.013	0.627TrpAsp: 0.627 ± 0.025	0.571TrpGlu: 0.571 ± 0.025	0.522TrpPhe: 0.522 ± 0.024	0.676TrpGly: 0.676 ± 0.029	0.362TrpHis: 0.362 ± 0.022	0.654TrpIle: 0.654 ± 0.028	0.488TrpLys: 0.488 ± 0.026	1.764TrpLeu: 1.764 ± 0.053	0.382TrpMet: 0.382 ± 0.02	0.432TrpAsn: 0.432 ± 0.02	0.421TrpPro: 0.421 ± 0.021	0.835TrpGln: 0.835 ± 0.034	0.914TrpArg: 0.914 ± 0.035	0.669TrpSer: 0.669 ± 0.026	0.488TrpThr: 0.488 ± 0.024	0.926TrpVal: 0.926 ± 0.036	0.194TrpTrp: 0.194 ± 0.016	0.29TrpTyr: 0.29 ± 0.021	0.0TrpXaa: 0.0 ± 0.0
Tyr	2.696TyrAla: 2.696 ± 0.059	0.366TyrCys: 0.366 ± 0.02	1.305TyrAsp: 1.305 ± 0.038	1.245TyrGlu: 1.245 ± 0.038	1.182TyrPhe: 1.182 ± 0.039	1.95TyrGly: 1.95 ± 0.048	0.648TyrHis: 0.648 ± 0.029	1.255TyrIle: 1.255 ± 0.04	1.01TyrLys: 1.01 ± 0.035	3.176TyrLeu: 3.176 ± 0.059	0.524TyrMet: 0.524 ± 0.025	0.836TyrAsn: 0.836 ± 0.034	1.292TyrPro: 1.292 ± 0.037	1.369TyrGln: 1.369 ± 0.034	1.852TyrArg: 1.852 ± 0.045	1.66TyrSer: 1.66 ± 0.044	1.359TyrThr: 1.359 ± 0.041	1.687TyrVal: 1.687 ± 0.048	0.392TyrTrp: 0.392 ± 0.021	0.778TyrTyr: 0.778 ± 0.035	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 2853 proteins (938798 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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