Amino acid dipepetide frequency for Labrenzia alexandrii

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
14.082AlaAla: 14.082 ± 0.129
0.995AlaCys: 0.995 ± 0.025
6.775AlaAsp: 6.775 ± 0.07
7.434AlaGlu: 7.434 ± 0.09
4.522AlaPhe: 4.522 ± 0.067
9.367AlaGly: 9.367 ± 0.097
2.044AlaHis: 2.044 ± 0.037
5.988AlaIle: 5.988 ± 0.068
4.406AlaLys: 4.406 ± 0.057
11.702AlaLeu: 11.702 ± 0.101
3.111AlaMet: 3.111 ± 0.046
3.214AlaAsn: 3.214 ± 0.048
4.732AlaPro: 4.732 ± 0.061
3.697AlaGln: 3.697 ± 0.058
6.262AlaArg: 6.262 ± 0.073
6.18AlaSer: 6.18 ± 0.067
5.33AlaThr: 5.33 ± 0.065
8.065AlaVal: 8.065 ± 0.089
1.201AlaTrp: 1.201 ± 0.03
2.604AlaTyr: 2.604 ± 0.041
0.0AlaXaa: 0.0 ± 0.0
Cys
0.934CysAla: 0.934 ± 0.027
0.123CysCys: 0.123 ± 0.008
0.547CysAsp: 0.547 ± 0.019
0.456CysGlu: 0.456 ± 0.018
0.358CysPhe: 0.358 ± 0.016
0.905CysGly: 0.905 ± 0.029
0.258CysHis: 0.258 ± 0.017
0.395CysIle: 0.395 ± 0.017
0.267CysLys: 0.267 ± 0.013
0.874CysLeu: 0.874 ± 0.023
0.174CysMet: 0.174 ± 0.01
0.229CysAsn: 0.229 ± 0.014
0.453CysPro: 0.453 ± 0.019
0.302CysGln: 0.302 ± 0.013
0.55CysArg: 0.55 ± 0.02
0.53CysSer: 0.53 ± 0.021
0.406CysThr: 0.406 ± 0.017
0.601CysVal: 0.601 ± 0.02
0.118CysTrp: 0.118 ± 0.009
0.192CysTyr: 0.192 ± 0.011
0.0CysXaa: 0.0 ± 0.0
Asp
6.389AspAla: 6.389 ± 0.073
0.497AspCys: 0.497 ± 0.018
3.37AspAsp: 3.37 ± 0.062
3.687AspGlu: 3.687 ± 0.054
2.389AspPhe: 2.389 ± 0.04
5.411AspGly: 5.411 ± 0.076
1.323AspHis: 1.323 ± 0.033
3.472AspIle: 3.472 ± 0.052
2.142AspLys: 2.142 ± 0.043
6.716AspLeu: 6.716 ± 0.076
1.556AspMet: 1.556 ± 0.036
1.61AspAsn: 1.61 ± 0.038
3.492AspPro: 3.492 ± 0.051
2.154AspGln: 2.154 ± 0.038
3.999AspArg: 3.999 ± 0.056
2.256AspSer: 2.256 ± 0.041
3.229AspThr: 3.229 ± 0.061
4.365AspVal: 4.365 ± 0.059
0.986AspTrp: 0.986 ± 0.029
1.641AspTyr: 1.641 ± 0.036
0.0AspXaa: 0.0 ± 0.0
Glu
7.309GluAla: 7.309 ± 0.078
0.356GluCys: 0.356 ± 0.015
3.737GluAsp: 3.737 ± 0.05
3.865GluGlu: 3.865 ± 0.061
2.083GluPhe: 2.083 ± 0.036
4.252GluGly: 4.252 ± 0.052
1.203GluHis: 1.203 ± 0.029
4.075GluIle: 4.075 ± 0.052
2.851GluLys: 2.851 ± 0.048
5.844GluLeu: 5.844 ± 0.072
1.615GluMet: 1.615 ± 0.033
2.185GluAsn: 2.185 ± 0.042
2.59GluPro: 2.59 ± 0.053
2.224GluGln: 2.224 ± 0.038
4.159GluArg: 4.159 ± 0.065
2.397GluSer: 2.397 ± 0.034
4.579GluThr: 4.579 ± 0.062
4.015GluVal: 4.015 ± 0.054
0.655GluTrp: 0.655 ± 0.021
1.106GluTyr: 1.106 ± 0.026
0.0GluXaa: 0.0 ± 0.0
Phe
4.444PheAla: 4.444 ± 0.06
0.458PheCys: 0.458 ± 0.017
2.818PheAsp: 2.818 ± 0.044
2.612PheGlu: 2.612 ± 0.047
1.704PhePhe: 1.704 ± 0.038
3.795PheGly: 3.795 ± 0.054
0.755PheHis: 0.755 ± 0.023
1.886PheIle: 1.886 ± 0.04
1.433PheLys: 1.433 ± 0.034
3.946PheLeu: 3.946 ± 0.054
0.955PheMet: 0.955 ± 0.022
1.248PheAsn: 1.248 ± 0.033
1.614PhePro: 1.614 ± 0.033
1.287PheGln: 1.287 ± 0.026
2.041PheArg: 2.041 ± 0.042
2.656PheSer: 2.656 ± 0.046
2.081PheThr: 2.081 ± 0.04
2.949PheVal: 2.949 ± 0.045
0.576PheTrp: 0.576 ± 0.018
1.044PheTyr: 1.044 ± 0.026
0.0PheXaa: 0.0 ± 0.0
Gly
8.368GlyAla: 8.368 ± 0.091
0.826GlyCys: 0.826 ± 0.024
4.578GlyAsp: 4.578 ± 0.063
4.639GlyGlu: 4.639 ± 0.057
3.864GlyPhe: 3.864 ± 0.055
6.859GlyGly: 6.859 ± 0.08
1.907GlyHis: 1.907 ± 0.032
4.697GlyIle: 4.697 ± 0.062
3.492GlyLys: 3.492 ± 0.052
8.794GlyLeu: 8.794 ± 0.082
2.227GlyMet: 2.227 ± 0.043
2.303GlyAsn: 2.303 ± 0.046
3.294GlyPro: 3.294 ± 0.05
2.916GlyGln: 2.916 ± 0.046
4.838GlyArg: 4.838 ± 0.053
4.815GlySer: 4.815 ± 0.051
4.754GlyThr: 4.754 ± 0.065
5.877GlyVal: 5.877 ± 0.066
1.246GlyTrp: 1.246 ± 0.032
2.423GlyTyr: 2.423 ± 0.043
0.0GlyXaa: 0.0 ± 0.0
His
1.936HisAla: 1.936 ± 0.035
0.241HisCys: 0.241 ± 0.013
1.143HisAsp: 1.143 ± 0.029
1.07HisGlu: 1.07 ± 0.026
0.912HisPhe: 0.912 ± 0.022
1.789HisGly: 1.789 ± 0.037
0.555HisHis: 0.555 ± 0.025
1.042HisIle: 1.042 ± 0.027
0.687HisLys: 0.687 ± 0.022
2.131HisLeu: 2.131 ± 0.045
0.519HisMet: 0.519 ± 0.018
0.477HisAsn: 0.477 ± 0.017
1.238HisPro: 1.238 ± 0.028
0.713HisGln: 0.713 ± 0.02
1.166HisArg: 1.166 ± 0.028
0.984HisSer: 0.984 ± 0.024
0.911HisThr: 0.911 ± 0.024
1.421HisVal: 1.421 ± 0.033
0.311HisTrp: 0.311 ± 0.015
0.548HisTyr: 0.548 ± 0.022
0.0HisXaa: 0.0 ± 0.0
Ile
6.829IleAla: 6.829 ± 0.069
0.623IleCys: 0.623 ± 0.02
3.732IleAsp: 3.732 ± 0.063
3.652IleGlu: 3.652 ± 0.049
1.935IlePhe: 1.935 ± 0.039
5.231IleGly: 5.231 ± 0.06
0.963IleHis: 0.963 ± 0.024
2.539IleIle: 2.539 ± 0.044
1.86IleLys: 1.86 ± 0.039
5.107IleLeu: 5.107 ± 0.061
1.116IleMet: 1.116 ± 0.028
1.641IleAsn: 1.641 ± 0.035
2.469IlePro: 2.469 ± 0.039
1.572IleGln: 1.572 ± 0.031
3.199IleArg: 3.199 ± 0.045
3.588IleSer: 3.588 ± 0.054
3.008IleThr: 3.008 ± 0.049
4.113IleVal: 4.113 ± 0.061
0.681IleTrp: 0.681 ± 0.022
1.306IleTyr: 1.306 ± 0.033
0.0IleXaa: 0.0 ± 0.0
Lys
4.703LysAla: 4.703 ± 0.065
0.221LysCys: 0.221 ± 0.012
2.463LysAsp: 2.463 ± 0.047
2.154LysGlu: 2.154 ± 0.043
1.175LysPhe: 1.175 ± 0.028
2.88LysGly: 2.88 ± 0.047
0.773LysHis: 0.773 ± 0.023
2.292LysIle: 2.292 ± 0.041
1.753LysLys: 1.753 ± 0.037
3.724LysLeu: 3.724 ± 0.056
0.941LysMet: 0.941 ± 0.022
1.238LysAsn: 1.238 ± 0.027
2.192LysPro: 2.192 ± 0.042
1.233LysGln: 1.233 ± 0.028
2.574LysArg: 2.574 ± 0.042
2.4LysSer: 2.4 ± 0.034
2.684LysThr: 2.684 ± 0.039
2.846LysVal: 2.846 ± 0.051
0.45LysTrp: 0.45 ± 0.016
0.776LysTyr: 0.776 ± 0.022
0.0LysXaa: 0.0 ± 0.0
Leu
11.602LeuAla: 11.602 ± 0.104
0.924LeuCys: 0.924 ± 0.026
5.933LeuAsp: 5.933 ± 0.07
6.193LeuGlu: 6.193 ± 0.059
3.898LeuPhe: 3.898 ± 0.057
7.92LeuGly: 7.92 ± 0.09
1.698LeuHis: 1.698 ± 0.039
5.497LeuIle: 5.497 ± 0.07
4.623LeuLys: 4.623 ± 0.058
8.963LeuLeu: 8.963 ± 0.104
2.517LeuMet: 2.517 ± 0.039
3.253LeuAsn: 3.253 ± 0.048
5.181LeuPro: 5.181 ± 0.059
3.095LeuGln: 3.095 ± 0.041
5.569LeuArg: 5.569 ± 0.064
7.092LeuSer: 7.092 ± 0.066
5.921LeuThr: 5.921 ± 0.071
7.088LeuVal: 7.088 ± 0.073
1.099LeuTrp: 1.099 ± 0.03
2.063LeuTyr: 2.063 ± 0.035
0.0LeuXaa: 0.0 ± 0.0
Met
2.974MetAla: 2.974 ± 0.04
0.174MetCys: 0.174 ± 0.01
1.32MetAsp: 1.32 ± 0.028
1.303MetGlu: 1.303 ± 0.026
0.836MetPhe: 0.836 ± 0.026
1.826MetGly: 1.826 ± 0.039
0.423MetHis: 0.423 ± 0.017
1.567MetIle: 1.567 ± 0.032
1.123MetLys: 1.123 ± 0.029
2.309MetLeu: 2.309 ± 0.039
0.697MetMet: 0.697 ± 0.019
0.829MetAsn: 0.829 ± 0.022
1.465MetPro: 1.465 ± 0.03
0.797MetGln: 0.797 ± 0.022
1.657MetArg: 1.657 ± 0.031
1.852MetSer: 1.852 ± 0.032
2.022MetThr: 2.022 ± 0.037
1.759MetVal: 1.759 ± 0.032
0.218MetTrp: 0.218 ± 0.011
0.342MetTyr: 0.342 ± 0.017
0.0MetXaa: 0.0 ± 0.0
Asn
3.394AsnAla: 3.394 ± 0.053
0.28AsnCys: 0.28 ± 0.013
1.665AsnAsp: 1.665 ± 0.036
1.608AsnGlu: 1.608 ± 0.033
1.138AsnPhe: 1.138 ± 0.03
2.79AsnGly: 2.79 ± 0.056
0.553AsnHis: 0.553 ± 0.019
1.612AsnIle: 1.612 ± 0.037
1.002AsnLys: 1.002 ± 0.026
2.961AsnLeu: 2.961 ± 0.044
0.79AsnMet: 0.79 ± 0.022
0.91AsnAsn: 0.91 ± 0.03
1.96AsnPro: 1.96 ± 0.038
1.015AsnGln: 1.015 ± 0.026
1.935AsnArg: 1.935 ± 0.034
1.604AsnSer: 1.604 ± 0.037
1.653AsnThr: 1.653 ± 0.037
2.129AsnVal: 2.129 ± 0.039
0.507AsnTrp: 0.507 ± 0.018
0.774AsnTyr: 0.774 ± 0.022
0.0AsnXaa: 0.0 ± 0.0
Pro
5.104ProAla: 5.104 ± 0.07
0.301ProCys: 0.301 ± 0.013
3.824ProAsp: 3.824 ± 0.05
3.83ProGlu: 3.83 ± 0.053
2.128ProPhe: 2.128 ± 0.038
4.044ProGly: 4.044 ± 0.049
0.992ProHis: 0.992 ± 0.026
2.433ProIle: 2.433 ± 0.043
1.932ProLys: 1.932 ± 0.043
4.279ProLeu: 4.279 ± 0.059
1.163ProMet: 1.163 ± 0.027
1.514ProAsn: 1.514 ± 0.034
1.993ProPro: 1.993 ± 0.037
1.612ProGln: 1.612 ± 0.038
2.231ProArg: 2.231 ± 0.038
2.675ProSer: 2.675 ± 0.043
2.174ProThr: 2.174 ± 0.038
4.268ProVal: 4.268 ± 0.056
0.594ProTrp: 0.594 ± 0.021
1.149ProTyr: 1.149 ± 0.031
0.0ProXaa: 0.0 ± 0.0
Gln
3.72GlnAla: 3.72 ± 0.051
0.208GlnCys: 0.208 ± 0.012
1.901GlnAsp: 1.901 ± 0.036
1.932GlnGlu: 1.932 ± 0.034
1.231GlnPhe: 1.231 ± 0.029
2.295GlnGly: 2.295 ± 0.034
0.637GlnHis: 0.637 ± 0.019
2.107GlnIle: 2.107 ± 0.038
1.481GlnLys: 1.481 ± 0.032
3.135GlnLeu: 3.135 ± 0.043
0.999GlnMet: 0.999 ± 0.029
1.224GlnAsn: 1.224 ± 0.03
1.65GlnPro: 1.65 ± 0.041
1.255GlnGln: 1.255 ± 0.039
2.114GlnArg: 2.114 ± 0.04
2.185GlnSer: 2.185 ± 0.041
2.154GlnThr: 2.154 ± 0.043
2.37GlnVal: 2.37 ± 0.04
0.342GlnTrp: 0.342 ± 0.013
0.635GlnTyr: 0.635 ± 0.02
0.0GlnXaa: 0.0 ± 0.0
Arg
5.823ArgAla: 5.823 ± 0.059
0.453ArgCys: 0.453 ± 0.017
3.443ArgAsp: 3.443 ± 0.049
3.452ArgGlu: 3.452 ± 0.056
2.65ArgPhe: 2.65 ± 0.044
3.843ArgGly: 3.843 ± 0.046
1.365ArgHis: 1.365 ± 0.032
3.533ArgIle: 3.533 ± 0.049
2.588ArgLys: 2.588 ± 0.049
6.625ArgLeu: 6.625 ± 0.086
1.639ArgMet: 1.639 ± 0.029
1.779ArgAsn: 1.779 ± 0.037
2.829ArgPro: 2.829 ± 0.042
2.423ArgGln: 2.423 ± 0.044
3.957ArgArg: 3.957 ± 0.059
3.53ArgSer: 3.53 ± 0.049
3.068ArgThr: 3.068 ± 0.045
3.878ArgVal: 3.878 ± 0.053
0.761ArgTrp: 0.761 ± 0.024
1.475ArgTyr: 1.475 ± 0.034
0.0ArgXaa: 0.0 ± 0.0
Ser
6.428SerAla: 6.428 ± 0.06
0.459SerCys: 0.459 ± 0.019
3.763SerAsp: 3.763 ± 0.057
3.667SerGlu: 3.667 ± 0.044
2.494SerPhe: 2.494 ± 0.043
5.924SerGly: 5.924 ± 0.065
1.114SerHis: 1.114 ± 0.026
3.063SerIle: 3.063 ± 0.049
2.211SerLys: 2.211 ± 0.042
5.695SerLeu: 5.695 ± 0.064
1.486SerMet: 1.486 ± 0.026
1.813SerAsn: 1.813 ± 0.04
2.511SerPro: 2.511 ± 0.039
1.883SerGln: 1.883 ± 0.037
3.318SerArg: 3.318 ± 0.05
3.461SerSer: 3.461 ± 0.054
2.84SerThr: 2.84 ± 0.045
4.343SerVal: 4.343 ± 0.065
0.775SerTrp: 0.775 ± 0.022
1.385SerTyr: 1.385 ± 0.032
0.0SerXaa: 0.0 ± 0.0
Thr
6.341ThrAla: 6.341 ± 0.067
0.447ThrCys: 0.447 ± 0.016
3.301ThrAsp: 3.301 ± 0.057
3.143ThrGlu: 3.143 ± 0.046
2.201ThrPhe: 2.201 ± 0.037
5.509ThrGly: 5.509 ± 0.068
1.042ThrHis: 1.042 ± 0.025
3.057ThrIle: 3.057 ± 0.053
1.815ThrLys: 1.815 ± 0.037
5.923ThrLeu: 5.923 ± 0.059
1.212ThrMet: 1.212 ± 0.028
1.567ThrAsn: 1.567 ± 0.035
3.167ThrPro: 3.167 ± 0.048
1.652ThrGln: 1.652 ± 0.035
2.929ThrArg: 2.929 ± 0.049
3.285ThrSer: 3.285 ± 0.055
2.914ThrThr: 2.914 ± 0.056
4.591ThrVal: 4.591 ± 0.067
0.723ThrTrp: 0.723 ± 0.023
1.383ThrTyr: 1.383 ± 0.031
0.0ThrXaa: 0.0 ± 0.0
Val
7.873ValAla: 7.873 ± 0.087
0.677ValCys: 0.677 ± 0.023
4.212ValAsp: 4.212 ± 0.05
4.385ValGlu: 4.385 ± 0.059
3.181ValPhe: 3.181 ± 0.048
5.144ValGly: 5.144 ± 0.065
1.357ValHis: 1.357 ± 0.034
4.171ValIle: 4.171 ± 0.063
2.504ValLys: 2.504 ± 0.042
7.578ValLeu: 7.578 ± 0.086
1.907ValMet: 1.907 ± 0.035
2.092ValAsn: 2.092 ± 0.038
3.59ValPro: 3.59 ± 0.045
2.23ValGln: 2.23 ± 0.041
4.182ValArg: 4.182 ± 0.054
4.989ValSer: 4.989 ± 0.06
4.502ValThr: 4.502 ± 0.066
5.552ValVal: 5.552 ± 0.075
0.867ValTrp: 0.867 ± 0.025
1.606ValTyr: 1.606 ± 0.035
0.0ValXaa: 0.0 ± 0.0
Trp
1.08TrpAla: 1.08 ± 0.028
0.142TrpCys: 0.142 ± 0.009
0.687TrpAsp: 0.687 ± 0.019
0.567TrpGlu: 0.567 ± 0.019
0.568TrpPhe: 0.568 ± 0.019
0.881TrpGly: 0.881 ± 0.028
0.311TrpHis: 0.311 ± 0.013
0.712TrpIle: 0.712 ± 0.022
0.465TrpLys: 0.465 ± 0.018
1.42TrpLeu: 1.42 ± 0.035
0.358TrpMet: 0.358 ± 0.014
0.449TrpAsn: 0.449 ± 0.014
0.695TrpPro: 0.695 ± 0.023
0.634TrpGln: 0.634 ± 0.021
0.867TrpArg: 0.867 ± 0.024
0.829TrpSer: 0.829 ± 0.025
0.775TrpThr: 0.775 ± 0.022
0.775TrpVal: 0.775 ± 0.022
0.198TrpTrp: 0.198 ± 0.013
0.291TrpTyr: 0.291 ± 0.012
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.381TyrAla: 2.381 ± 0.043
0.267TyrCys: 0.267 ± 0.013
1.472TyrAsp: 1.472 ± 0.028
1.452TyrGlu: 1.452 ± 0.031
1.032TyrPhe: 1.032 ± 0.028
2.052TyrGly: 2.052 ± 0.042
0.521TyrHis: 0.521 ± 0.017
1.024TyrIle: 1.024 ± 0.026
0.836TyrLys: 0.836 ± 0.025
2.404TyrLeu: 2.404 ± 0.039
0.511TyrMet: 0.511 ± 0.018
0.701TyrAsn: 0.701 ± 0.022
1.13TyrPro: 1.13 ± 0.028
0.883TyrGln: 0.883 ± 0.026
1.567TyrArg: 1.567 ± 0.036
1.325TyrSer: 1.325 ± 0.029
1.195TyrThr: 1.195 ± 0.028
1.591TyrVal: 1.591 ± 0.033
0.399TyrTrp: 0.399 ± 0.016
0.668TyrTyr: 0.668 ± 0.024
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4993 proteins (1582945 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski