Dorcoceras hygrometricum

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Average proteome isoelectric point is 7.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 45898 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z7D8A3|A0A2Z7D8A3_9LAMI 3-hydroxy-3-methylglutaryl coenzyme A synthase OS=Dorcoceras hygrometricum OX=472368 GN=F511_26294 PE=3 SV=1
MM1 pKa = 7.47VDD3 pKa = 3.11SSTIAATGFFDD14 pKa = 5.83DD15 pKa = 5.53WILCAWLQLFDD26 pKa = 3.75TSAFLASGFPATGYY40 pKa = 10.77AKK42 pKa = 10.08HH43 pKa = 6.28CRR45 pKa = 11.84SLLIVDD51 pKa = 3.83VTADD55 pKa = 4.79FIITDD60 pKa = 3.87PALALLFTTADD71 pKa = 4.15CDD73 pKa = 5.66DD74 pKa = 3.43ITADD78 pKa = 3.8VNIADD83 pKa = 3.47FRR85 pKa = 11.84YY86 pKa = 8.35RR87 pKa = 11.84TSCC90 pKa = 3.64

Molecular weight: 9.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z7CHT6|A0A2Z7CHT6_9LAMI Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_18876 PE=4 SV=1
MM1 pKa = 7.28IVAFFARR8 pKa = 11.84NQQVPFFARR17 pKa = 11.84NQQVPFFARR26 pKa = 11.84NQQVPFFARR35 pKa = 11.84NQQVPFFARR44 pKa = 11.84NQQVPFFARR53 pKa = 11.84NQQVPFFARR62 pKa = 11.84NQQVPFFARR71 pKa = 11.84NQQVPFFARR80 pKa = 11.84NQQVPFFARR89 pKa = 11.84NQQVPFFARR98 pKa = 11.84NQQVPFFARR107 pKa = 11.84NQQVPFFARR116 pKa = 11.84NQQVPFFARR125 pKa = 11.84NQQVPFFARR134 pKa = 11.84NQQVPFFARR143 pKa = 11.84NQQVPFFARR152 pKa = 11.84NQQVPFFARR161 pKa = 11.84NQQVPFFARR170 pKa = 11.84NQQVPFFARR179 pKa = 11.84NQQVPFFARR188 pKa = 11.84NQQVPFFARR197 pKa = 11.84NQQVPFFARR206 pKa = 11.84NQQVLLSEE214 pKa = 4.57KK215 pKa = 10.17PAGASS220 pKa = 3.18

Molecular weight: 26.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

45898

0

45898

14407823

50

4973

313.9

35.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.416 ± 0.016

1.793 ± 0.006

5.452 ± 0.009

6.422 ± 0.014

3.962 ± 0.008

6.077 ± 0.012

2.359 ± 0.005

5.295 ± 0.009

5.693 ± 0.011

9.152 ± 0.014

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.383 ± 0.004

3.957 ± 0.008

4.914 ± 0.01

4.065 ± 0.009

6.243 ± 0.012

9.216 ± 0.016

5.248 ± 0.01

6.686 ± 0.011

1.236 ± 0.004

2.416 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski