Crateriforma conspicua

Taxonomy: cellular organisms; Bacteria; PVC group; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae;

Average proteome isoelectric point is 6.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5367 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C5YEU5|A0A5C5YEU5_9PLAN Uncharacterized protein OS=Crateriforma conspicua OX=2527996 GN=Pan14r_40780 PE=4 SV=1
MM1 pKa = 7.68IGNFLQVTPQQLQEE15 pKa = 4.84LIASPEE21 pKa = 4.22TIDD24 pKa = 4.86DD25 pKa = 4.03LLYY28 pKa = 10.59PEE30 pKa = 5.9DD31 pKa = 4.54EE32 pKa = 5.04DD33 pKa = 5.27SGIDD37 pKa = 4.66IDD39 pKa = 4.38KK40 pKa = 9.82AWHH43 pKa = 6.77GIHH46 pKa = 6.78FMLTGEE52 pKa = 4.63QYY54 pKa = 11.19DD55 pKa = 3.97GTPPFSDD62 pKa = 3.99VIFATSTVGDD72 pKa = 3.77DD73 pKa = 3.5VGYY76 pKa = 10.96GPARR80 pKa = 11.84YY81 pKa = 7.96LTAPEE86 pKa = 4.06VSAVADD92 pKa = 3.84ALRR95 pKa = 11.84EE96 pKa = 4.05VPRR99 pKa = 11.84DD100 pKa = 3.9DD101 pKa = 3.33FAKK104 pKa = 10.45RR105 pKa = 11.84YY106 pKa = 9.13DD107 pKa = 3.8AAALTANDD115 pKa = 4.69IYY117 pKa = 10.44PQIWSGDD124 pKa = 3.28EE125 pKa = 3.92DD126 pKa = 5.08LDD128 pKa = 4.96YY129 pKa = 11.54LLSWYY134 pKa = 7.81DD135 pKa = 3.48TLRR138 pKa = 11.84DD139 pKa = 3.87YY140 pKa = 11.78YY141 pKa = 11.3LDD143 pKa = 3.92AASKK147 pKa = 10.07GNAMLQYY154 pKa = 11.21LNN156 pKa = 4.37

Molecular weight: 17.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C5XS66|A0A5C5XS66_9PLAN DUF1080 domain-containing protein OS=Crateriforma conspicua OX=2527996 GN=Pan14r_50440 PE=4 SV=1
MM1 pKa = 7.59AKK3 pKa = 9.95KK4 pKa = 10.08KK5 pKa = 9.75AAKK8 pKa = 9.5KK9 pKa = 9.58RR10 pKa = 11.84AVKK13 pKa = 10.28KK14 pKa = 10.41RR15 pKa = 11.84ATKK18 pKa = 10.01KK19 pKa = 9.98AAVKK23 pKa = 10.48KK24 pKa = 10.3KK25 pKa = 8.73VAKK28 pKa = 10.21KK29 pKa = 9.87RR30 pKa = 11.84ATKK33 pKa = 10.5KK34 pKa = 10.32KK35 pKa = 8.75VAKK38 pKa = 10.16KK39 pKa = 9.87KK40 pKa = 9.21AAKK43 pKa = 9.82KK44 pKa = 9.86RR45 pKa = 11.84ATKK48 pKa = 10.51KK49 pKa = 10.28KK50 pKa = 8.59VAKK53 pKa = 10.28KK54 pKa = 8.89KK55 pKa = 7.12TAKK58 pKa = 9.99KK59 pKa = 10.12RR60 pKa = 11.84ATKK63 pKa = 10.28KK64 pKa = 9.87KK65 pKa = 8.97AAKK68 pKa = 9.59KK69 pKa = 10.04RR70 pKa = 11.84RR71 pKa = 3.58

Molecular weight: 8.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5367

0

5367

2083014

29

12236

388.1

42.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.7 ± 0.032

1.17 ± 0.019

7.243 ± 0.045

5.363 ± 0.03

3.606 ± 0.02

7.913 ± 0.048

2.238 ± 0.023

5.023 ± 0.024

3.126 ± 0.035

9.168 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.337 ± 0.024

3.062 ± 0.029

5.325 ± 0.029

4.25 ± 0.024

7.004 ± 0.049

6.514 ± 0.028

5.701 ± 0.052

7.38 ± 0.031

1.556 ± 0.019

2.323 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski