Rice dwarf virus (isolate Fujian) (RDV)

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Reoviridae; Sedoreovirinae; Phytoreovirus; Rice dwarf virus

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q98632|P2_RDVF Minor outer capsid protein P2 OS=Rice dwarf virus (isolate Fujian) OX=142804 PE=1 SV=1
MM1 pKa = 8.06AYY3 pKa = 9.78PNDD6 pKa = 3.48VRR8 pKa = 11.84NVWDD12 pKa = 3.78VYY14 pKa = 11.35NVFRR18 pKa = 11.84DD19 pKa = 3.82VPNRR23 pKa = 11.84EE24 pKa = 3.59HH25 pKa = 7.84LIRR28 pKa = 11.84DD29 pKa = 3.22IRR31 pKa = 11.84NGLVTVRR38 pKa = 11.84NLTNMLTNMEE48 pKa = 4.97RR49 pKa = 11.84DD50 pKa = 3.62DD51 pKa = 3.95QLIIAQLSNMMKK63 pKa = 9.98SLSIGIEE70 pKa = 3.81KK71 pKa = 10.07AQNEE75 pKa = 4.15LSKK78 pKa = 11.26LKK80 pKa = 8.63TTDD83 pKa = 3.04ADD85 pKa = 4.12RR86 pKa = 11.84AAVLADD92 pKa = 3.5YY93 pKa = 7.51QTSVLNIEE101 pKa = 4.58RR102 pKa = 11.84NTMLLTGYY110 pKa = 9.84FKK112 pKa = 10.82QLVLDD117 pKa = 3.58LTGYY121 pKa = 10.14VGASVYY127 pKa = 10.53PILPFMITGDD137 pKa = 3.39QSMMVDD143 pKa = 4.15SINVNMKK150 pKa = 10.24NVFDD154 pKa = 5.12DD155 pKa = 3.32KK156 pKa = 11.34HH157 pKa = 5.42EE158 pKa = 4.03QEE160 pKa = 4.58IVLPIHH166 pKa = 6.21PACFVSTITEE176 pKa = 4.12DD177 pKa = 3.39TSSVVYY183 pKa = 10.89ADD185 pKa = 3.47GDD187 pKa = 3.69EE188 pKa = 4.68LYY190 pKa = 10.37SVHH193 pKa = 6.11VRR195 pKa = 11.84HH196 pKa = 6.55EE197 pKa = 4.05NMTMYY202 pKa = 10.86VNVLGEE208 pKa = 4.35TVEE211 pKa = 4.25TRR213 pKa = 11.84QLSMIGEE220 pKa = 4.59SIVPDD225 pKa = 3.91DD226 pKa = 4.5FAPSLLILRR235 pKa = 11.84FSQDD239 pKa = 2.68SVGEE243 pKa = 4.14VFYY246 pKa = 11.0LSHH249 pKa = 7.75DD250 pKa = 4.18NIKK253 pKa = 10.69KK254 pKa = 10.09FLGHH258 pKa = 5.74SLEE261 pKa = 4.22YY262 pKa = 8.67TDD264 pKa = 4.92KK265 pKa = 11.39YY266 pKa = 11.25VIFDD270 pKa = 3.32VARR273 pKa = 11.84RR274 pKa = 11.84ASTTRR279 pKa = 11.84NTITDD284 pKa = 4.27GFCSVDD290 pKa = 3.32GVPYY294 pKa = 10.62LDD296 pKa = 4.4GRR298 pKa = 11.84FIYY301 pKa = 10.25QPSGISADD309 pKa = 3.82SNICAIYY316 pKa = 10.26NSYY319 pKa = 10.73VLDD322 pKa = 3.41VLRR325 pKa = 11.84YY326 pKa = 7.78ITEE329 pKa = 4.31CEE331 pKa = 3.69VDD333 pKa = 3.73TLRR336 pKa = 11.84SVYY339 pKa = 10.55DD340 pKa = 3.59RR341 pKa = 11.84TSSTVFSKK349 pKa = 10.18TDD351 pKa = 3.16VLRR354 pKa = 11.84PRR356 pKa = 11.84LLTMQSNISALSAATPQLANDD377 pKa = 4.76VITSDD382 pKa = 3.73STDD385 pKa = 3.75LLSLGTVLTVSNEE398 pKa = 3.64FTADD402 pKa = 3.48DD403 pKa = 4.06TTLSTSLAGHH413 pKa = 5.89CQVDD417 pKa = 3.95YY418 pKa = 11.68SEE420 pKa = 5.98GSPQDD425 pKa = 3.09KK426 pKa = 10.82SMSIPVSCDD435 pKa = 2.78SSQLASSTVHH445 pKa = 6.47SYY447 pKa = 10.83SADD450 pKa = 3.24ILGHH454 pKa = 5.18GLKK457 pKa = 10.35GDD459 pKa = 3.77RR460 pKa = 11.84NLNLMINVPGLMNPQKK476 pKa = 9.82VTVDD480 pKa = 3.32YY481 pKa = 10.95VYY483 pKa = 11.53SDD485 pKa = 3.74GYY487 pKa = 10.55KK488 pKa = 10.66LNFASVVAPDD498 pKa = 3.21APFWINATLQLSLSPSAHH516 pKa = 5.67NMLSKK521 pKa = 9.92LTPLDD526 pKa = 3.66NDD528 pKa = 3.62ACPGLKK534 pKa = 10.06AQANTPVLVSMTINLDD550 pKa = 3.46DD551 pKa = 4.18ATPALGGEE559 pKa = 4.59VIQNCVFKK567 pKa = 10.46IHH569 pKa = 6.9HH570 pKa = 6.82GDD572 pKa = 3.39DD573 pKa = 3.57VYY575 pKa = 12.0SFVTDD580 pKa = 4.06FDD582 pKa = 4.76VISYY586 pKa = 8.94TSTSGTNCLKK596 pKa = 10.73LISSVDD602 pKa = 3.1ITSQLPSDD610 pKa = 3.15MWIYY614 pKa = 11.16VMNGSPDD621 pKa = 3.21AAFISGDD628 pKa = 3.91SVNMSSVDD636 pKa = 3.1WHH638 pKa = 6.24QSTSQTVGNYY648 pKa = 8.83VYY650 pKa = 10.54ATMKK654 pKa = 10.48AYY656 pKa = 9.75WNVTSYY662 pKa = 11.27DD663 pKa = 3.5VEE665 pKa = 3.95ARR667 pKa = 11.84PYY669 pKa = 8.52ATYY672 pKa = 10.98VPGKK676 pKa = 10.31INFTAIDD683 pKa = 3.74HH684 pKa = 6.99ADD686 pKa = 3.68VFVDD690 pKa = 4.98DD691 pKa = 4.87YY692 pKa = 10.77NTGVNSYY699 pKa = 10.62VIVNSRR705 pKa = 11.84IYY707 pKa = 10.86YY708 pKa = 9.63KK709 pKa = 10.7GNSSIYY715 pKa = 8.71EE716 pKa = 4.1VPSGSFIKK724 pKa = 10.55VSYY727 pKa = 8.03FTSPLKK733 pKa = 11.03NPTVDD738 pKa = 3.4AYY740 pKa = 11.05NAEE743 pKa = 4.07ISRR746 pKa = 11.84NSAYY750 pKa = 10.6LIKK753 pKa = 10.85ANASLDD759 pKa = 3.63SVAAMLSNISNRR771 pKa = 11.84IDD773 pKa = 3.08AMEE776 pKa = 4.43RR777 pKa = 11.84LMEE780 pKa = 4.0PTRR783 pKa = 11.84AHH785 pKa = 7.2RR786 pKa = 11.84IAGVVSSIGGVISLGMPLLGAIVVTIGSIISIADD820 pKa = 3.54PDD822 pKa = 3.85KK823 pKa = 11.39QGIDD827 pKa = 3.48YY828 pKa = 10.63HH829 pKa = 7.88SVANAFMSWCQYY841 pKa = 11.16AAVCRR846 pKa = 11.84YY847 pKa = 9.64EE848 pKa = 4.02YY849 pKa = 11.43GLLKK853 pKa = 10.76RR854 pKa = 11.84GDD856 pKa = 3.77EE857 pKa = 4.2KK858 pKa = 11.55LDD860 pKa = 3.4VLSFMPKK867 pKa = 9.56RR868 pKa = 11.84VVSDD872 pKa = 3.97FKK874 pKa = 11.27NKK876 pKa = 9.57PDD878 pKa = 3.98VISLPEE884 pKa = 4.37LGEE887 pKa = 4.2SVLRR891 pKa = 11.84GSSTDD896 pKa = 3.6YY897 pKa = 11.38LDD899 pKa = 3.42TEE901 pKa = 4.34INIIYY906 pKa = 10.48NDD908 pKa = 3.89MQLLGQGKK916 pKa = 10.1LSDD919 pKa = 3.84WLNKK923 pKa = 8.73TVSKK927 pKa = 11.09VEE929 pKa = 3.79NNAANFFEE937 pKa = 4.65RR938 pKa = 11.84NLVKK942 pKa = 10.66SLANKK947 pKa = 9.36EE948 pKa = 4.18VLPVHH953 pKa = 6.2ARR955 pKa = 11.84VEE957 pKa = 4.03ITQTEE962 pKa = 4.54KK963 pKa = 10.62IGDD966 pKa = 3.84VYY968 pKa = 10.26RR969 pKa = 11.84TTILYY974 pKa = 9.13TGINEE979 pKa = 4.1GSYY982 pKa = 10.76LGGDD986 pKa = 3.69VFASRR991 pKa = 11.84LGDD994 pKa = 3.7KK995 pKa = 10.79NILRR999 pKa = 11.84MNGFEE1004 pKa = 4.22SGPGRR1009 pKa = 11.84FKK1011 pKa = 11.1AIVEE1015 pKa = 4.43STTEE1019 pKa = 3.66VGNFRR1024 pKa = 11.84VVDD1027 pKa = 3.54WTVSGMSRR1035 pKa = 11.84YY1036 pKa = 9.32EE1037 pKa = 3.54IYY1039 pKa = 10.65AAAGEE1044 pKa = 4.64VYY1046 pKa = 9.95PSKK1049 pKa = 10.86DD1050 pKa = 3.21PSHH1053 pKa = 7.29ADD1055 pKa = 3.16VQLLYY1060 pKa = 10.83EE1061 pKa = 4.53SIVRR1065 pKa = 11.84DD1066 pKa = 3.39LTTRR1070 pKa = 11.84DD1071 pKa = 2.98GSFVLKK1077 pKa = 10.58HH1078 pKa = 6.41HH1079 pKa = 7.34DD1080 pKa = 3.65VLLLPGQLDD1089 pKa = 3.5AFEE1092 pKa = 4.37EE1093 pKa = 4.73LIIKK1097 pKa = 9.07NASNYY1102 pKa = 9.08QYY1104 pKa = 11.81AFIGSNCSKK1113 pKa = 10.84LCAA1116 pKa = 4.26

Molecular weight: 123.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q85443|NSP12_RDVF Non-structural protein 12A OS=Rice dwarf virus (isolate Fujian) OX=142804 PE=2 SV=1
MM1 pKa = 7.79SGTLPLAMTASEE13 pKa = 4.89SFVGMQVLAQDD24 pKa = 4.45KK25 pKa = 9.24EE26 pKa = 4.54VKK28 pKa = 9.37ATFIALDD35 pKa = 3.48RR36 pKa = 11.84KK37 pKa = 10.48LPANLKK43 pKa = 9.22VPYY46 pKa = 8.92MKK48 pKa = 10.12NAKK51 pKa = 9.48YY52 pKa = 8.07RR53 pKa = 11.84TCICPSSNHH62 pKa = 6.32LVDD65 pKa = 5.24DD66 pKa = 4.75CVCEE70 pKa = 4.06DD71 pKa = 4.05VIIAYY76 pKa = 7.41TAHH79 pKa = 7.1RR80 pKa = 11.84NNAVAALLYY89 pKa = 10.55SDD91 pKa = 4.73GNVIHH96 pKa = 7.52RR97 pKa = 11.84SGTLKK102 pKa = 10.56PKK104 pKa = 9.33SQNRR108 pKa = 11.84FDD110 pKa = 4.07LRR112 pKa = 11.84GFLTSVNPGEE122 pKa = 4.24SSKK125 pKa = 11.68AEE127 pKa = 4.1AGTSKK132 pKa = 9.31STQKK136 pKa = 11.05AYY138 pKa = 10.49DD139 pKa = 3.85RR140 pKa = 11.84KK141 pKa = 10.7DD142 pKa = 3.14KK143 pKa = 11.35SPSKK147 pKa = 10.79GKK149 pKa = 10.02NSKK152 pKa = 10.37KK153 pKa = 10.24GGKK156 pKa = 9.3KK157 pKa = 9.86SSSEE161 pKa = 4.1RR162 pKa = 11.84KK163 pKa = 8.84RR164 pKa = 11.84KK165 pKa = 9.4EE166 pKa = 3.57YY167 pKa = 10.81SSNSEE172 pKa = 3.84TDD174 pKa = 3.3LSSDD178 pKa = 2.88SDD180 pKa = 3.99ANTRR184 pKa = 11.84KK185 pKa = 9.88SKK187 pKa = 10.83RR188 pKa = 11.84KK189 pKa = 9.37

Molecular weight: 20.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13

0

13

7840

92

1444

603.1

67.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.722 ± 0.312

1.161 ± 0.117

6.314 ± 0.314

4.579 ± 0.286

4.26 ± 0.243

5.37 ± 0.261

2.092 ± 0.164

6.237 ± 0.218

5.255 ± 0.474

9.592 ± 0.236

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.908 ± 0.112

5.357 ± 0.179

4.26 ± 0.235

3.048 ± 0.181

4.898 ± 0.257

9.63 ± 0.388

6.173 ± 0.301

7.258 ± 0.459

0.842 ± 0.138

4.043 ± 0.302
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski