Wenzhou tapeworm virus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Nyamiviridae; Tapwovirus; Tapeworm tapwovirus

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KN32|A0A1L3KN32_9MONO Putative glycoprotein OS=Wenzhou tapeworm virus 1 OX=1923661 PE=4 SV=1
MM1 pKa = 6.93STITRR6 pKa = 11.84SSKK9 pKa = 10.38RR10 pKa = 11.84SGSEE14 pKa = 3.51LSGSARR20 pKa = 11.84KK21 pKa = 7.91YY22 pKa = 9.35QRR24 pKa = 11.84YY25 pKa = 8.89NPEE28 pKa = 4.33DD29 pKa = 3.69LQEE32 pKa = 4.57GADD35 pKa = 3.83LDD37 pKa = 3.97YY38 pKa = 11.53QEE40 pKa = 4.65WQFGSHH46 pKa = 6.14GSVPTTVEE54 pKa = 3.57EE55 pKa = 4.79KK56 pKa = 10.63YY57 pKa = 10.77AALALQDD64 pKa = 3.86QEE66 pKa = 4.59STSAQGPQDD75 pKa = 3.75PATVSTTDD83 pKa = 3.52PAVQILDD90 pKa = 3.66QDD92 pKa = 4.11SSNQTPHH99 pKa = 6.78PALVVMLGRR108 pKa = 11.84IVANQEE114 pKa = 3.99RR115 pKa = 11.84IIEE118 pKa = 3.97LLQRR122 pKa = 11.84IEE124 pKa = 3.7AQQRR128 pKa = 11.84HH129 pKa = 5.21FADD132 pKa = 4.15SEE134 pKa = 4.5KK135 pKa = 11.02AWTEE139 pKa = 3.56ALNATKK145 pKa = 10.21TSLIEE150 pKa = 4.15LYY152 pKa = 9.75RR153 pKa = 11.84QSSVAIVRR161 pKa = 11.84PSQTSKK167 pKa = 10.43PAPLLQAPTATFLSNPSVADD187 pKa = 3.88ANASAFNKK195 pKa = 9.49FFF197 pKa = 4.5

Molecular weight: 21.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KN08|A0A1L3KN08_9MONO GDP polyribonucleotidyltransferase OS=Wenzhou tapeworm virus 1 OX=1923661 PE=4 SV=1
MM1 pKa = 7.65IKK3 pKa = 10.57NILRR7 pKa = 11.84DD8 pKa = 3.52SGTSILSGSVVHH20 pKa = 6.47SLGGLVSTVTGGLGVTAIYY39 pKa = 10.5KK40 pKa = 9.61KK41 pKa = 11.13VKK43 pKa = 10.33DD44 pKa = 3.44RR45 pKa = 11.84WAKK48 pKa = 9.68KK49 pKa = 10.02QEE51 pKa = 4.35AGCTTIKK58 pKa = 10.36FKK60 pKa = 11.08HH61 pKa = 5.69FTTGPDD67 pKa = 3.29GTFCICGDD75 pKa = 3.15KK76 pKa = 11.0HH77 pKa = 6.99KK78 pKa = 10.16FTGHH82 pKa = 6.65LVLLTTPGDD91 pKa = 4.02EE92 pKa = 5.01LGHH95 pKa = 6.81LPTGHH100 pKa = 5.38YY101 pKa = 9.45HH102 pKa = 5.3KK103 pKa = 10.58QAMVVCLAPQCMDD116 pKa = 3.6NNVQNPEE123 pKa = 4.19EE124 pKa = 4.4LCLLPAHH131 pKa = 7.03ASSII135 pKa = 3.95

Molecular weight: 14.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3448

135

1961

689.6

77.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.874 ± 0.671

2.001 ± 0.305

5.191 ± 0.294

5.626 ± 0.231

3.77 ± 0.323

5.307 ± 0.469

2.958 ± 0.285

5.916 ± 0.394

3.944 ± 0.457

10.267 ± 0.898

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.552 ± 0.349

3.248 ± 0.174

5.8 ± 0.461

3.828 ± 0.607

6.497 ± 0.572

7.831 ± 0.591

6.061 ± 0.607

6.932 ± 0.941

1.508 ± 0.397

3.886 ± 0.489
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski