Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_94

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
6.639AlaAla: 6.639 ± 2.213
0.0AlaCys: 0.0 ± 0.0
5.432AlaAsp: 5.432 ± 3.011
5.432AlaGlu: 5.432 ± 3.04
1.207AlaPhe: 1.207 ± 0.41
1.811AlaGly: 1.811 ± 0.809
2.414AlaHis: 2.414 ± 0.987
3.621AlaIle: 3.621 ± 1.303
2.414AlaLys: 2.414 ± 1.491
6.035AlaLeu: 6.035 ± 1.527
3.018AlaMet: 3.018 ± 1.466
6.035AlaAsn: 6.035 ± 1.662
1.811AlaPro: 1.811 ± 0.677
3.018AlaGln: 3.018 ± 1.445
1.811AlaArg: 1.811 ± 0.327
6.639AlaSer: 6.639 ± 2.025
1.207AlaThr: 1.207 ± 0.559
3.018AlaVal: 3.018 ± 1.445
0.604AlaTrp: 0.604 ± 0.435
3.018AlaTyr: 3.018 ± 0.446
0.0AlaXaa: 0.0 ± 0.0
Cys
0.604CysAla: 0.604 ± 0.507
0.604CysCys: 0.604 ± 0.435
1.811CysAsp: 1.811 ± 0.677
0.0CysGlu: 0.0 ± 0.0
1.207CysPhe: 1.207 ± 0.87
1.207CysGly: 1.207 ± 0.41
0.604CysHis: 0.604 ± 0.507
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
1.811CysLeu: 1.811 ± 1.52
0.0CysMet: 0.0 ± 0.0
0.604CysAsn: 0.604 ± 0.507
0.0CysPro: 0.0 ± 0.0
0.604CysGln: 0.604 ± 0.507
0.0CysArg: 0.0 ± 0.0
0.604CysSer: 0.604 ± 0.435
0.604CysThr: 0.604 ± 0.435
0.604CysVal: 0.604 ± 0.507
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.621AspAla: 3.621 ± 0.893
0.0AspCys: 0.0 ± 0.0
8.449AspAsp: 8.449 ± 1.336
3.018AspGlu: 3.018 ± 0.999
4.225AspPhe: 4.225 ± 1.573
3.621AspGly: 3.621 ± 1.23
0.0AspHis: 0.0 ± 0.0
4.828AspIle: 4.828 ± 1.988
4.828AspLys: 4.828 ± 2.607
5.432AspLeu: 5.432 ± 2.899
1.811AspMet: 1.811 ± 1.067
3.018AspAsn: 3.018 ± 1.474
3.018AspPro: 3.018 ± 0.982
0.604AspGln: 0.604 ± 0.435
1.811AspArg: 1.811 ± 0.677
5.432AspSer: 5.432 ± 1.672
4.828AspThr: 4.828 ± 0.881
3.621AspVal: 3.621 ± 2.029
1.811AspTrp: 1.811 ± 0.327
6.639AspTyr: 6.639 ± 1.267
0.0AspXaa: 0.0 ± 0.0
Glu
1.207GluAla: 1.207 ± 1.184
0.604GluCys: 0.604 ± 0.507
3.018GluAsp: 3.018 ± 2.038
3.018GluGlu: 3.018 ± 0.932
1.811GluPhe: 1.811 ± 0.677
1.811GluGly: 1.811 ± 1.135
0.0GluHis: 0.0 ± 0.0
2.414GluIle: 2.414 ± 0.864
4.828GluLys: 4.828 ± 1.237
8.449GluLeu: 8.449 ± 1.939
0.604GluMet: 0.604 ± 0.507
1.207GluAsn: 1.207 ± 0.65
0.0GluPro: 0.0 ± 0.0
0.0GluGln: 0.0 ± 0.0
3.621GluArg: 3.621 ± 1.803
3.018GluSer: 3.018 ± 0.446
3.621GluThr: 3.621 ± 2.133
2.414GluVal: 2.414 ± 1.204
0.604GluTrp: 0.604 ± 0.592
3.018GluTyr: 3.018 ± 0.446
0.0GluXaa: 0.0 ± 0.0
Phe
3.621PheAla: 3.621 ± 0.602
0.604PheCys: 0.604 ± 0.435
4.828PheAsp: 4.828 ± 0.944
1.811PheGlu: 1.811 ± 0.813
1.811PhePhe: 1.811 ± 0.96
2.414PheGly: 2.414 ± 0.82
1.811PheHis: 1.811 ± 0.813
2.414PheIle: 2.414 ± 0.82
1.207PheLys: 1.207 ± 0.41
5.432PheLeu: 5.432 ± 1.811
0.0PheMet: 0.0 ± 0.0
2.414PheAsn: 2.414 ± 2.027
2.414PhePro: 2.414 ± 1.689
1.207PheGln: 1.207 ± 0.41
1.811PheArg: 1.811 ± 0.813
7.242PheSer: 7.242 ± 2.395
3.621PheThr: 3.621 ± 1.671
4.225PheVal: 4.225 ± 1.573
0.0PheTrp: 0.0 ± 0.0
2.414PheTyr: 2.414 ± 1.74
0.0PheXaa: 0.0 ± 0.0
Gly
3.018GlyAla: 3.018 ± 1.95
0.0GlyCys: 0.0 ± 0.0
3.018GlyAsp: 3.018 ± 1.321
2.414GlyGlu: 2.414 ± 0.864
2.414GlyPhe: 2.414 ± 0.644
1.207GlyGly: 1.207 ± 0.87
0.604GlyHis: 0.604 ± 0.507
4.225GlyIle: 4.225 ± 2.621
2.414GlyLys: 2.414 ± 0.82
4.225GlyLeu: 4.225 ± 1.088
1.207GlyMet: 1.207 ± 0.87
1.207GlyAsn: 1.207 ± 0.87
0.604GlyPro: 0.604 ± 0.435
3.621GlyGln: 3.621 ± 1.897
3.018GlyArg: 3.018 ± 1.474
6.035GlySer: 6.035 ± 3.605
3.621GlyThr: 3.621 ± 0.602
3.621GlyVal: 3.621 ± 1.196
1.207GlyTrp: 1.207 ± 0.41
3.621GlyTyr: 3.621 ± 1.353
0.0GlyXaa: 0.0 ± 0.0
His
1.811HisAla: 1.811 ± 0.677
0.0HisCys: 0.0 ± 0.0
1.207HisAsp: 1.207 ± 0.41
0.604HisGlu: 0.604 ± 0.507
1.207HisPhe: 1.207 ± 1.013
1.811HisGly: 1.811 ± 0.813
1.811HisHis: 1.811 ± 0.96
3.621HisIle: 3.621 ± 1.212
1.207HisLys: 1.207 ± 1.013
1.811HisLeu: 1.811 ± 0.677
0.0HisMet: 0.0 ± 0.0
1.207HisAsn: 1.207 ± 0.87
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
3.018HisArg: 3.018 ± 1.404
1.207HisSer: 1.207 ± 1.013
1.207HisThr: 1.207 ± 0.41
1.207HisVal: 1.207 ± 1.013
0.0HisTrp: 0.0 ± 0.0
1.811HisTyr: 1.811 ± 0.813
0.0HisXaa: 0.0 ± 0.0
Ile
3.621IleAla: 3.621 ± 0.893
1.207IleCys: 1.207 ± 0.41
5.432IleAsp: 5.432 ± 2.166
4.828IleGlu: 4.828 ± 1.186
2.414IlePhe: 2.414 ± 1.74
4.828IleGly: 4.828 ± 1.537
1.207IleHis: 1.207 ± 0.41
3.621IleIle: 3.621 ± 1.897
4.828IleLys: 4.828 ± 2.603
6.639IleLeu: 6.639 ± 2.265
1.811IleMet: 1.811 ± 0.809
2.414IleAsn: 2.414 ± 1.172
3.018IlePro: 3.018 ± 1.474
1.207IleGln: 1.207 ± 0.87
3.018IleArg: 3.018 ± 1.597
5.432IleSer: 5.432 ± 0.777
3.621IleThr: 3.621 ± 1.227
0.604IleVal: 0.604 ± 0.507
0.0IleTrp: 0.0 ± 0.0
1.811IleTyr: 1.811 ± 0.813
0.0IleXaa: 0.0 ± 0.0
Lys
2.414LysAla: 2.414 ± 0.864
0.604LysCys: 0.604 ± 0.507
3.018LysAsp: 3.018 ± 0.446
1.811LysGlu: 1.811 ± 0.813
2.414LysPhe: 2.414 ± 0.82
3.018LysGly: 3.018 ± 1.321
1.811LysHis: 1.811 ± 1.52
2.414LysIle: 2.414 ± 0.412
2.414LysLys: 2.414 ± 1.3
6.035LysLeu: 6.035 ± 1.848
0.0LysMet: 0.0 ± 0.566
1.207LysAsn: 1.207 ± 0.87
3.621LysPro: 3.621 ± 1.489
3.018LysGln: 3.018 ± 1.644
5.432LysArg: 5.432 ± 1.488
5.432LysSer: 5.432 ± 2.218
3.018LysThr: 3.018 ± 1.95
1.811LysVal: 1.811 ± 0.327
1.207LysTrp: 1.207 ± 0.41
3.621LysTyr: 3.621 ± 2.552
0.0LysXaa: 0.0 ± 0.0
Leu
7.242LeuAla: 7.242 ± 2.355
0.0LeuCys: 0.0 ± 0.0
8.449LeuAsp: 8.449 ± 2.79
4.828LeuGlu: 4.828 ± 1.912
4.225LeuPhe: 4.225 ± 2.786
6.639LeuGly: 6.639 ± 2.197
2.414LeuHis: 2.414 ± 1.091
7.242LeuIle: 7.242 ± 2.393
3.018LeuLys: 3.018 ± 0.763
6.035LeuLeu: 6.035 ± 0.976
1.811LeuMet: 1.811 ± 0.392
5.432LeuAsn: 5.432 ± 1.571
4.225LeuPro: 4.225 ± 0.929
5.432LeuGln: 5.432 ± 3.375
1.811LeuArg: 1.811 ± 0.327
10.863LeuSer: 10.863 ± 2.14
4.828LeuThr: 4.828 ± 1.345
3.621LeuVal: 3.621 ± 1.057
1.811LeuTrp: 1.811 ± 0.677
4.225LeuTyr: 4.225 ± 1.573
0.0LeuXaa: 0.0 ± 0.0
Met
0.0MetAla: 0.0 ± 0.0
0.0MetCys: 0.0 ± 0.0
0.604MetAsp: 0.604 ± 1.103
1.811MetGlu: 1.811 ± 1.776
0.604MetPhe: 0.604 ± 1.103
2.414MetGly: 2.414 ± 1.119
0.0MetHis: 0.0 ± 0.0
1.811MetIle: 1.811 ± 1.16
0.0MetLys: 0.0 ± 0.0
0.604MetLeu: 0.604 ± 0.592
0.604MetMet: 0.604 ± 0.507
0.0MetAsn: 0.0 ± 0.0
1.207MetPro: 1.207 ± 0.87
1.811MetGln: 1.811 ± 0.677
0.604MetArg: 0.604 ± 0.435
2.414MetSer: 2.414 ± 1.061
0.604MetThr: 0.604 ± 0.435
2.414MetVal: 2.414 ± 0.412
0.0MetTrp: 0.0 ± 0.0
1.207MetTyr: 1.207 ± 0.559
0.0MetXaa: 0.0 ± 0.0
Asn
3.018AsnAla: 3.018 ± 1.597
1.207AsnCys: 1.207 ± 0.87
4.225AsnAsp: 4.225 ± 0.792
1.811AsnGlu: 1.811 ± 1.067
4.225AsnPhe: 4.225 ± 1.415
4.225AsnGly: 4.225 ± 1.926
1.811AsnHis: 1.811 ± 0.677
2.414AsnIle: 2.414 ± 1.74
4.828AsnLys: 4.828 ± 2.603
3.018AsnLeu: 3.018 ± 1.183
0.0AsnMet: 0.0 ± 0.0
3.018AsnAsn: 3.018 ± 1.268
0.604AsnPro: 0.604 ± 0.435
1.207AsnGln: 1.207 ± 0.87
2.414AsnArg: 2.414 ± 1.291
6.639AsnSer: 6.639 ± 1.882
3.018AsnThr: 3.018 ± 1.815
3.018AsnVal: 3.018 ± 0.763
0.604AsnTrp: 0.604 ± 0.592
2.414AsnTyr: 2.414 ± 1.061
0.0AsnXaa: 0.0 ± 0.0
Pro
1.207ProAla: 1.207 ± 0.559
1.207ProCys: 1.207 ± 0.41
3.018ProAsp: 3.018 ± 0.982
1.811ProGlu: 1.811 ± 0.96
5.432ProPhe: 5.432 ± 1.903
0.604ProGly: 0.604 ± 0.507
0.604ProHis: 0.604 ± 0.507
2.414ProIle: 2.414 ± 1.486
2.414ProLys: 2.414 ± 0.956
4.225ProLeu: 4.225 ± 1.285
1.207ProMet: 1.207 ± 0.87
2.414ProAsn: 2.414 ± 1.486
0.0ProPro: 0.0 ± 0.0
1.811ProGln: 1.811 ± 0.809
0.604ProArg: 0.604 ± 0.435
3.621ProSer: 3.621 ± 0.893
2.414ProThr: 2.414 ± 0.82
1.207ProVal: 1.207 ± 0.87
0.0ProTrp: 0.0 ± 0.0
1.207ProTyr: 1.207 ± 0.41
0.0ProXaa: 0.0 ± 0.0
Gln
4.828GlnAla: 4.828 ± 1.033
0.0GlnCys: 0.0 ± 0.0
1.811GlnAsp: 1.811 ± 0.327
0.0GlnGlu: 0.0 ± 0.0
0.604GlnPhe: 0.604 ± 0.435
3.018GlnGly: 3.018 ± 1.321
1.207GlnHis: 1.207 ± 1.013
0.604GlnIle: 0.604 ± 0.507
3.018GlnLys: 3.018 ± 0.446
4.828GlnLeu: 4.828 ± 1.241
0.0GlnMet: 0.0 ± 0.0
4.225GlnAsn: 4.225 ± 0.929
1.811GlnPro: 1.811 ± 1.305
3.018GlnGln: 3.018 ± 2.211
3.018GlnArg: 3.018 ± 0.763
1.207GlnSer: 1.207 ± 1.184
4.225GlnThr: 4.225 ± 1.926
1.811GlnVal: 1.811 ± 0.809
0.0GlnTrp: 0.0 ± 0.0
3.018GlnTyr: 3.018 ± 0.999
0.0GlnXaa: 0.0 ± 0.0
Arg
3.621ArgAla: 3.621 ± 1.423
0.0ArgCys: 0.0 ± 0.0
1.207ArgAsp: 1.207 ± 0.41
2.414ArgGlu: 2.414 ± 0.644
4.828ArgPhe: 4.828 ± 1.64
1.207ArgGly: 1.207 ± 1.273
1.207ArgHis: 1.207 ± 1.013
5.432ArgIle: 5.432 ± 1.019
3.621ArgLys: 3.621 ± 0.972
2.414ArgLeu: 2.414 ± 0.412
1.207ArgMet: 1.207 ± 1.184
4.225ArgAsn: 4.225 ± 0.792
3.018ArgPro: 3.018 ± 0.982
0.604ArgGln: 0.604 ± 0.592
0.0ArgArg: 0.0 ± 0.0
3.621ArgSer: 3.621 ± 0.893
1.207ArgThr: 1.207 ± 0.41
0.604ArgVal: 0.604 ± 0.507
0.604ArgTrp: 0.604 ± 0.435
4.828ArgTyr: 4.828 ± 1.835
0.0ArgXaa: 0.0 ± 0.0
Ser
7.846SerAla: 7.846 ± 3.373
2.414SerCys: 2.414 ± 2.027
4.828SerAsp: 4.828 ± 2.123
3.018SerGlu: 3.018 ± 0.982
5.432SerPhe: 5.432 ± 2.162
4.225SerGly: 4.225 ± 2.355
0.604SerHis: 0.604 ± 0.507
3.621SerIle: 3.621 ± 1.23
4.828SerLys: 4.828 ± 1.264
8.449SerLeu: 8.449 ± 1.868
0.604SerMet: 0.604 ± 0.851
5.432SerAsn: 5.432 ± 1.075
6.035SerPro: 6.035 ± 1.878
3.018SerGln: 3.018 ± 0.86
5.432SerArg: 5.432 ± 1.032
8.449SerSer: 8.449 ± 1.669
4.828SerThr: 4.828 ± 2.304
9.656SerVal: 9.656 ± 2.473
0.604SerTrp: 0.604 ± 0.435
6.639SerTyr: 6.639 ± 2.107
0.0SerXaa: 0.0 ± 0.0
Thr
2.414ThrAla: 2.414 ± 1.119
0.604ThrCys: 0.604 ± 0.435
4.828ThrAsp: 4.828 ± 2.407
2.414ThrGlu: 2.414 ± 2.368
2.414ThrPhe: 2.414 ± 0.82
1.811ThrGly: 1.811 ± 0.677
1.207ThrHis: 1.207 ± 0.41
3.018ThrIle: 3.018 ± 0.763
4.225ThrLys: 4.225 ± 1.97
7.242ThrLeu: 7.242 ± 1.477
0.604ThrMet: 0.604 ± 1.103
1.811ThrAsn: 1.811 ± 0.677
2.414ThrPro: 2.414 ± 0.864
3.621ThrGln: 3.621 ± 1.303
2.414ThrArg: 2.414 ± 1.119
7.846ThrSer: 7.846 ± 2.064
3.621ThrThr: 3.621 ± 0.893
0.604ThrVal: 0.604 ± 0.435
0.604ThrTrp: 0.604 ± 0.435
4.225ThrTyr: 4.225 ± 1.236
0.0ThrXaa: 0.0 ± 0.0
Val
4.225ValAla: 4.225 ± 0.886
0.604ValCys: 0.604 ± 0.507
2.414ValAsp: 2.414 ± 1.061
2.414ValGlu: 2.414 ± 1.291
1.207ValPhe: 1.207 ± 0.87
1.811ValGly: 1.811 ± 0.327
3.018ValHis: 3.018 ± 1.031
1.811ValIle: 1.811 ± 1.004
0.604ValLys: 0.604 ± 0.507
6.035ValLeu: 6.035 ± 1.982
0.604ValMet: 0.604 ± 0.592
3.018ValAsn: 3.018 ± 1.474
3.018ValPro: 3.018 ± 1.39
2.414ValGln: 2.414 ± 0.412
3.621ValArg: 3.621 ± 1.603
4.828ValSer: 4.828 ± 1.578
4.225ValThr: 4.225 ± 1.97
3.621ValVal: 3.621 ± 1.23
0.604ValTrp: 0.604 ± 0.435
0.0ValTyr: 0.0 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.207TrpAla: 1.207 ± 0.41
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.604TrpGlu: 0.604 ± 0.592
0.604TrpPhe: 0.604 ± 0.435
0.604TrpGly: 0.604 ± 0.435
0.0TrpHis: 0.0 ± 0.0
1.207TrpIle: 1.207 ± 1.184
0.0TrpLys: 0.0 ± 0.0
1.207TrpLeu: 1.207 ± 0.41
1.207TrpMet: 1.207 ± 0.87
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.604TrpGln: 0.604 ± 0.435
0.604TrpArg: 0.604 ± 0.435
1.207TrpSer: 1.207 ± 1.013
1.207TrpThr: 1.207 ± 0.87
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.604TrpTyr: 0.604 ± 0.507
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.018TyrAla: 3.018 ± 1.183
1.207TyrCys: 1.207 ± 0.41
3.018TyrAsp: 3.018 ± 0.982
1.207TyrGlu: 1.207 ± 0.65
3.018TyrPhe: 3.018 ± 1.031
3.018TyrGly: 3.018 ± 0.932
2.414TyrHis: 2.414 ± 0.82
4.828TyrIle: 4.828 ± 1.64
4.225TyrLys: 4.225 ± 1.179
4.225TyrLeu: 4.225 ± 0.687
1.811TyrMet: 1.811 ± 0.96
4.828TyrAsn: 4.828 ± 3.29
0.604TyrPro: 0.604 ± 0.435
5.432TyrGln: 5.432 ± 0.98
1.811TyrArg: 1.811 ± 0.813
4.225TyrSer: 4.225 ± 1.992
2.414TyrThr: 2.414 ± 0.82
2.414TyrVal: 2.414 ± 0.82
0.604TyrTrp: 0.604 ± 0.507
3.621TyrTyr: 3.621 ± 1.23
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (1658 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski