Listeria phage LP-039

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Jasinkavirinae; Pecentumvirus; unclassified Pecentumvirus

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 184 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C2IDM8|A0A5C2IDM8_9CAUD Uncharacterized protein OS=Listeria phage LP-039 OX=2590050 GN=FK485_0031 PE=4 SV=2
MM1 pKa = 8.16DD2 pKa = 4.66SNKK5 pKa = 9.99FLMDD9 pKa = 4.19LNKK12 pKa = 10.04FLTEE16 pKa = 3.44VDD18 pKa = 4.6KK19 pKa = 11.22IISSYY24 pKa = 11.58GEE26 pKa = 3.82DD27 pKa = 3.22ANYY30 pKa = 9.78EE31 pKa = 3.62ISFIRR36 pKa = 11.84EE37 pKa = 3.53KK38 pKa = 11.13YY39 pKa = 10.37ADD41 pKa = 4.15LDD43 pKa = 4.16EE44 pKa = 4.59GAKK47 pKa = 9.04WDD49 pKa = 4.19CEE51 pKa = 3.96EE52 pKa = 3.92TDD54 pKa = 3.66FFEE57 pKa = 4.38GVEE60 pKa = 4.43YY61 pKa = 10.47VSQMQTGEE69 pKa = 4.22DD70 pKa = 3.72CFEE73 pKa = 4.16GYY75 pKa = 9.85ILRR78 pKa = 11.84KK79 pKa = 9.45IKK81 pKa = 9.58NTDD84 pKa = 2.4WCLCITYY91 pKa = 10.4AII93 pKa = 4.41

Molecular weight: 10.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C2IDX3|A0A5C2IDX3_9CAUD Uncharacterized protein OS=Listeria phage LP-039 OX=2590050 GN=FK485_0161 PE=4 SV=2
MM1 pKa = 7.77ANNTRR6 pKa = 11.84GNLPRR11 pKa = 11.84GYY13 pKa = 8.15TALGDD18 pKa = 3.61GSEE21 pKa = 4.12SHH23 pKa = 5.94KK24 pKa = 9.73TVEE27 pKa = 3.95RR28 pKa = 11.84ALRR31 pKa = 11.84GYY33 pKa = 8.57YY34 pKa = 9.3TVDD37 pKa = 3.97FSNIYY42 pKa = 9.91EE43 pKa = 4.34HH44 pKa = 5.52MTEE47 pKa = 3.98RR48 pKa = 11.84DD49 pKa = 3.36LEE51 pKa = 4.31VRR53 pKa = 11.84QAYY56 pKa = 10.09AKK58 pKa = 10.56DD59 pKa = 4.33LISQRR64 pKa = 11.84TGIPLDD70 pKa = 3.56MILFRR75 pKa = 11.84KK76 pKa = 8.42KK77 pKa = 8.62TEE79 pKa = 4.01KK80 pKa = 9.25QTLTAIDD87 pKa = 3.42EE88 pKa = 4.4VFYY91 pKa = 11.14VKK93 pKa = 10.5QGVKK97 pKa = 9.87TIGKK101 pKa = 9.59VSIRR105 pKa = 11.84SQRR108 pKa = 11.84LLSSNMLIIIYY119 pKa = 8.63MSKK122 pKa = 9.08SHH124 pKa = 6.15MPRR127 pKa = 11.84VVRR130 pKa = 11.84NTGMKK135 pKa = 9.78TYY137 pKa = 9.47TKK139 pKa = 10.09RR140 pKa = 11.84SKK142 pKa = 11.08SDD144 pKa = 2.68IRR146 pKa = 11.84VAKK149 pKa = 9.98RR150 pKa = 11.84QRR152 pKa = 11.84KK153 pKa = 3.95TTKK156 pKa = 8.87RR157 pKa = 11.84QSYY160 pKa = 9.68

Molecular weight: 18.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

184

0

184

39130

33

1309

212.7

24.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.748 ± 0.217

0.654 ± 0.058

5.949 ± 0.142

8.18 ± 0.244

3.897 ± 0.116

5.896 ± 0.271

1.487 ± 0.084

6.611 ± 0.16

8.671 ± 0.263

8.462 ± 0.196

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.448 ± 0.098

5.658 ± 0.124

2.867 ± 0.156

3.399 ± 0.201

4.122 ± 0.128

6.903 ± 0.175

6.305 ± 0.172

7.212 ± 0.202

0.963 ± 0.061

4.567 ± 0.15
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski