Haloterrigena sp. YPL8

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena; unclassified Haloterrigena

Average proteome isoelectric point is 4.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3981 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7D5GNG8|A0A7D5GNG8_9EURY Uncharacterized protein OS=Haloterrigena sp. YPL8 OX=1699371 GN=HYG82_11000 PE=4 SV=1
MM1 pKa = 6.59VTTGAWGGFHH11 pKa = 7.67RR12 pKa = 11.84MGCITRR18 pKa = 11.84RR19 pKa = 11.84DD20 pKa = 3.48ILKK23 pKa = 10.38ASLGFGTVMGVGLVGRR39 pKa = 11.84WPEE42 pKa = 4.1TTTSEE47 pKa = 4.19TSFGDD52 pKa = 3.83GVNLQPSYY60 pKa = 10.89FCSANQDD67 pKa = 3.39IGWDD71 pKa = 3.85FMSQYY76 pKa = 11.42SDD78 pKa = 2.75IQTLRR83 pKa = 11.84MRR85 pKa = 11.84IEE87 pKa = 4.06PFSFSEE93 pKa = 3.91VDD95 pKa = 3.47TTVEE99 pKa = 4.26DD100 pKa = 3.52AKK102 pKa = 10.89RR103 pKa = 11.84WIDD106 pKa = 3.36EE107 pKa = 4.17ATEE110 pKa = 3.77NGYY113 pKa = 10.35DD114 pKa = 3.63VIASYY119 pKa = 10.32HH120 pKa = 6.51HH121 pKa = 6.52YY122 pKa = 9.36PDD124 pKa = 4.38NGSSQASALQHH135 pKa = 6.79AADD138 pKa = 4.69FWVEE142 pKa = 3.86HH143 pKa = 6.43YY144 pKa = 7.72GTLSQDD150 pKa = 3.25SAFTINLMNEE160 pKa = 3.94WGDD163 pKa = 3.91HH164 pKa = 5.12NVTASAYY171 pKa = 9.79ASAYY175 pKa = 10.11NDD177 pKa = 4.36AIDD180 pKa = 3.89TVRR183 pKa = 11.84SGTSYY188 pKa = 11.06DD189 pKa = 3.64GEE191 pKa = 4.49IVCDD195 pKa = 3.73APGWGQGTHH204 pKa = 6.47RR205 pKa = 11.84LADD208 pKa = 3.59AVEE211 pKa = 4.84EE212 pKa = 4.36IDD214 pKa = 6.11DD215 pKa = 4.71DD216 pKa = 4.75DD217 pKa = 5.1LVLSVHH223 pKa = 6.51VYY225 pKa = 9.71PNAYY229 pKa = 9.96NATTGEE235 pKa = 4.16WLRR238 pKa = 11.84PEE240 pKa = 4.29HH241 pKa = 7.01LDD243 pKa = 4.07VIDD246 pKa = 3.72EE247 pKa = 4.26TGYY250 pKa = 9.86PCMIGEE256 pKa = 4.55FGKK259 pKa = 10.59YY260 pKa = 7.64WPTQYY265 pKa = 11.36SDD267 pKa = 3.18TADD270 pKa = 4.2ADD272 pKa = 3.39WLAIVDD278 pKa = 4.09HH279 pKa = 6.32ATSLGWPVIGWAWNGDD295 pKa = 3.63TNEE298 pKa = 3.72QRR300 pKa = 11.84MNMVEE305 pKa = 4.5PYY307 pKa = 9.87WDD309 pKa = 4.22DD310 pKa = 3.57EE311 pKa = 4.64CGGPYY316 pKa = 9.71SEE318 pKa = 5.15SSYY321 pKa = 11.22FDD323 pKa = 3.41VIYY326 pKa = 10.53EE327 pKa = 4.09KK328 pKa = 10.84LGSGGNDD335 pKa = 2.93TGRR338 pKa = 11.84NDD340 pKa = 5.25DD341 pKa = 5.48DD342 pKa = 5.04GDD344 pKa = 4.07EE345 pKa = 4.42NGGNSEE351 pKa = 3.83PTAAIDD357 pKa = 4.5ADD359 pKa = 3.81ATDD362 pKa = 3.86VSVGDD367 pKa = 4.05TPSFDD372 pKa = 3.72ASASSEE378 pKa = 3.81EE379 pKa = 4.35DD380 pKa = 3.22GTIEE384 pKa = 4.17RR385 pKa = 11.84YY386 pKa = 8.96EE387 pKa = 3.91WTFGDD392 pKa = 4.09GTSATGKK399 pKa = 10.09RR400 pKa = 11.84VDD402 pKa = 3.77HH403 pKa = 6.53AFEE406 pKa = 4.4EE407 pKa = 4.76PGEE410 pKa = 4.16YY411 pKa = 9.23TVLLTVTDD419 pKa = 4.77DD420 pKa = 3.91EE421 pKa = 4.85NATDD425 pKa = 3.71TDD427 pKa = 4.54TITVTVTDD435 pKa = 4.08SAKK438 pKa = 10.29SAPGAPANLTVVATTTSSLTIEE460 pKa = 4.05WDD462 pKa = 3.69GVDD465 pKa = 3.48DD466 pKa = 4.32ADD468 pKa = 4.24YY469 pKa = 11.3YY470 pKa = 10.78VVSVDD475 pKa = 3.44GSVDD479 pKa = 3.2HH480 pKa = 6.4EE481 pKa = 4.66TPEE484 pKa = 4.04TTATIDD490 pKa = 3.47EE491 pKa = 5.09LEE493 pKa = 4.33TEE495 pKa = 4.14TGYY498 pKa = 11.04EE499 pKa = 3.92IGVSAVDD506 pKa = 3.27NGGAEE511 pKa = 4.4SATKK515 pKa = 9.43TVSATTASDD524 pKa = 3.67DD525 pKa = 4.64GSDD528 pKa = 4.26EE529 pKa = 4.63DD530 pKa = 6.22DD531 pKa = 3.47EE532 pKa = 5.74DD533 pKa = 4.59RR534 pKa = 11.84GNGDD538 pKa = 3.2FDD540 pKa = 5.37GDD542 pKa = 3.71LVAEE546 pKa = 4.68IRR548 pKa = 11.84ASTTSAWVGEE558 pKa = 4.48HH559 pKa = 6.18IGFFAVDD566 pKa = 3.5RR567 pKa = 11.84TGDD570 pKa = 3.86DD571 pKa = 3.13TWPTEE576 pKa = 4.07LDD578 pKa = 2.99WDD580 pKa = 4.47LGDD583 pKa = 3.97GTTASGWYY591 pKa = 7.37TAYY594 pKa = 10.39AYY596 pKa = 8.85DD597 pKa = 3.76SPGTYY602 pKa = 8.69TVALTATDD610 pKa = 4.41DD611 pKa = 3.62EE612 pKa = 5.22GTTTTHH618 pKa = 5.51EE619 pKa = 3.94VEE621 pKa = 3.83IAVFRR626 pKa = 11.84VRR628 pKa = 11.84RR629 pKa = 11.84SSPAVRR635 pKa = 11.84SSS637 pKa = 2.74

Molecular weight: 68.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7D5GL18|A0A7D5GL18_9EURY Arginine decarboxylase OS=Haloterrigena sp. YPL8 OX=1699371 GN=HYG82_11880 PE=3 SV=1
MM1 pKa = 7.57ARR3 pKa = 11.84RR4 pKa = 11.84AVARR8 pKa = 11.84YY9 pKa = 9.38SSTFSKK15 pKa = 10.36RR16 pKa = 11.84RR17 pKa = 11.84YY18 pKa = 7.54TLHH21 pKa = 4.79QHH23 pKa = 7.27IILLCLTVRR32 pKa = 11.84KK33 pKa = 8.33NTTYY37 pKa = 11.35RR38 pKa = 11.84MLLDD42 pKa = 4.22EE43 pKa = 5.71LIEE46 pKa = 3.96MPRR49 pKa = 11.84IRR51 pKa = 11.84RR52 pKa = 11.84AIEE55 pKa = 4.03LEE57 pKa = 4.05EE58 pKa = 4.56LPSPSTLCKK67 pKa = 10.35AFNRR71 pKa = 11.84LGMAVWRR78 pKa = 11.84ILLTLSVTLLPTNGVVGIDD97 pKa = 3.05ASGFDD102 pKa = 3.53RR103 pKa = 11.84SHH105 pKa = 6.94ASKK108 pKa = 10.5HH109 pKa = 3.65YY110 pKa = 8.79TKK112 pKa = 9.81RR113 pKa = 11.84TKK115 pKa = 9.96LTIQQLTVTLLVDD128 pKa = 3.67TRR130 pKa = 11.84ANAILDD136 pKa = 3.56LHH138 pKa = 5.57VTTTRR143 pKa = 11.84THH145 pKa = 6.9DD146 pKa = 3.68SKK148 pKa = 10.95IAPSLSKK155 pKa = 10.73RR156 pKa = 11.84NSGEE160 pKa = 3.76VAIFLGDD167 pKa = 4.35KK168 pKa = 10.91GYY170 pKa = 10.96DD171 pKa = 3.48DD172 pKa = 4.37QKK174 pKa = 10.85IHH176 pKa = 6.93ALAHH180 pKa = 6.05EE181 pKa = 5.01DD182 pKa = 3.73GVRR185 pKa = 11.84PLIKK189 pKa = 10.1HH190 pKa = 6.19RR191 pKa = 11.84EE192 pKa = 3.73FSSLHH197 pKa = 5.64KK198 pKa = 10.65ARR200 pKa = 11.84NARR203 pKa = 11.84LDD205 pKa = 3.64ADD207 pKa = 3.98SYY209 pKa = 9.04GHH211 pKa = 5.2VVRR214 pKa = 11.84TRR216 pKa = 11.84RR217 pKa = 11.84RR218 pKa = 11.84TLASNGNTAHH228 pKa = 7.0SSAHH232 pKa = 5.68DD233 pKa = 3.57TGGSSSVNSLSAVSLTPSTRR253 pKa = 11.84HH254 pKa = 5.97PEE256 pKa = 3.74RR257 pKa = 5.77

Molecular weight: 28.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3981

0

3981

1144613

42

1563

287.5

31.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.052 ± 0.055

0.766 ± 0.012

8.5 ± 0.052

8.601 ± 0.065

3.335 ± 0.028

8.351 ± 0.045

2.007 ± 0.02

4.724 ± 0.028

1.905 ± 0.021

8.698 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.754 ± 0.015

2.601 ± 0.022

4.556 ± 0.028

2.56 ± 0.024

6.511 ± 0.035

5.947 ± 0.035

6.7 ± 0.03

8.504 ± 0.041

1.18 ± 0.016

2.751 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski