Canis familiaris papillomavirus 13

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Taupapillomavirus; Taupapillomavirus 2

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J7JLS2|J7JLS2_9PAPI Protein E6 OS=Canis familiaris papillomavirus 13 OX=1226723 GN=E6 PE=3 SV=1
MM1 pKa = 7.86RR2 pKa = 11.84GLAPTNRR9 pKa = 11.84DD10 pKa = 2.86LDD12 pKa = 4.11LEE14 pKa = 4.53LGEE17 pKa = 5.31LVLPEE22 pKa = 4.37NLLSSEE28 pKa = 4.11RR29 pKa = 11.84LDD31 pKa = 3.73TEE33 pKa = 4.4EE34 pKa = 5.1EE35 pKa = 4.05EE36 pKa = 4.98SEE38 pKa = 4.7PDD40 pKa = 3.42PQHH43 pKa = 5.82YY44 pKa = 9.53RR45 pKa = 11.84VVTNCGRR52 pKa = 11.84CHH54 pKa = 4.84STLRR58 pKa = 11.84VFVAVLSVFQLRR70 pKa = 11.84TFEE73 pKa = 4.28QLLLDD78 pKa = 4.6GFTIVCLRR86 pKa = 11.84CSQQQSHH93 pKa = 5.88GRR95 pKa = 11.84HH96 pKa = 5.26

Molecular weight: 10.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J7JMM7|J7JMM7_9PAPI Minor capsid protein L2 OS=Canis familiaris papillomavirus 13 OX=1226723 GN=L2 PE=3 SV=1
MM1 pKa = 7.65EE2 pKa = 5.0NLHH5 pKa = 5.89TRR7 pKa = 11.84FDD9 pKa = 3.94VVQEE13 pKa = 3.98VLFQHH18 pKa = 6.29YY19 pKa = 8.74EE20 pKa = 3.94QGSHH24 pKa = 6.76KK25 pKa = 10.68LSDD28 pKa = 3.39HH29 pKa = 6.09ALFWEE34 pKa = 4.79AKK36 pKa = 8.4RR37 pKa = 11.84RR38 pKa = 11.84EE39 pKa = 4.15AIMLFFARR47 pKa = 11.84KK48 pKa = 8.68RR49 pKa = 11.84QMPRR53 pKa = 11.84LGFQPVPALSVSEE66 pKa = 5.0GNAKK70 pKa = 10.24DD71 pKa = 3.94AIKK74 pKa = 10.15MGLLLSSLQKK84 pKa = 10.5SPYY87 pKa = 9.85GDD89 pKa = 3.79EE90 pKa = 3.93PWRR93 pKa = 11.84ITDD96 pKa = 3.65VSLEE100 pKa = 3.99MLNTEE105 pKa = 5.16PKK107 pKa = 10.71DD108 pKa = 3.71CFKK111 pKa = 11.37KK112 pKa = 10.58NGITVEE118 pKa = 3.8VHH120 pKa = 6.25YY121 pKa = 11.39DD122 pKa = 3.51NDD124 pKa = 3.99PDD126 pKa = 3.76NAAHH130 pKa = 5.04YY131 pKa = 7.14TSWSEE136 pKa = 3.8IYY138 pKa = 9.52YY139 pKa = 10.66QNVDD143 pKa = 3.78DD144 pKa = 5.17DD145 pKa = 4.15WVKK148 pKa = 10.22VRR150 pKa = 11.84GRR152 pKa = 11.84VNYY155 pKa = 9.74EE156 pKa = 3.32GLFFVDD162 pKa = 3.28EE163 pKa = 4.98DD164 pKa = 4.16GEE166 pKa = 3.95EE167 pKa = 4.0RR168 pKa = 11.84YY169 pKa = 9.65YY170 pKa = 11.61VRR172 pKa = 11.84FQKK175 pKa = 10.64DD176 pKa = 2.98AEE178 pKa = 4.43RR179 pKa = 11.84YY180 pKa = 9.04GVTGMWRR187 pKa = 11.84VHH189 pKa = 5.61YY190 pKa = 9.14KK191 pKa = 10.28QSIISASVSSSGAAPAPSTHH211 pKa = 7.06HH212 pKa = 6.47AQTWWPDD219 pKa = 3.15WPDD222 pKa = 3.38AAPDD226 pKa = 3.62SSTGSTGQRR235 pKa = 11.84SSSSEE240 pKa = 3.76SRR242 pKa = 11.84EE243 pKa = 3.74GSEE246 pKa = 4.92DD247 pKa = 2.75PWEE250 pKa = 4.04RR251 pKa = 11.84RR252 pKa = 11.84EE253 pKa = 3.83RR254 pKa = 11.84RR255 pKa = 11.84LAGTRR260 pKa = 11.84RR261 pKa = 11.84GRR263 pKa = 11.84GGGRR267 pKa = 11.84GGGRR271 pKa = 11.84GRR273 pKa = 11.84GPEE276 pKa = 4.15ASPSPAPTPSALPVQGDD293 pKa = 4.25LPQSRR298 pKa = 11.84QRR300 pKa = 11.84EE301 pKa = 4.19EE302 pKa = 4.07EE303 pKa = 4.14EE304 pKa = 4.41EE305 pKa = 4.08EE306 pKa = 4.56GGPRR310 pKa = 11.84PHH312 pKa = 5.97QACWEE317 pKa = 4.14NGGEE321 pKa = 4.41GPSRR325 pKa = 11.84GSGGIKK331 pKa = 9.97RR332 pKa = 11.84RR333 pKa = 11.84GTGSRR338 pKa = 11.84GRR340 pKa = 11.84PPKK343 pKa = 10.5KK344 pKa = 9.59KK345 pKa = 8.75FCRR348 pKa = 11.84GGRR351 pKa = 11.84QQGEE355 pKa = 4.33FHH357 pKa = 6.5TPSPPTLQSSSFTSPGGDD375 pKa = 3.23FRR377 pKa = 11.84GGPHH381 pKa = 7.41PPRR384 pKa = 11.84LSLTLLDD391 pKa = 4.11GKK393 pKa = 11.12VGGRR397 pKa = 11.84SGQFGGHH404 pKa = 6.92PPQGPGQAPAQAGGFPVIVLKK425 pKa = 11.25GPGNSLKK432 pKa = 10.45CFRR435 pKa = 11.84LRR437 pKa = 11.84CRR439 pKa = 11.84RR440 pKa = 11.84GHH442 pKa = 4.98SQKK445 pKa = 10.23FLCISTGYY453 pKa = 8.19TWVCGEE459 pKa = 3.8GDD461 pKa = 3.18KK462 pKa = 11.15VGRR465 pKa = 11.84QRR467 pKa = 11.84LMIGFRR473 pKa = 11.84DD474 pKa = 3.23EE475 pKa = 4.24GQRR478 pKa = 11.84SFFLKK483 pKa = 10.2NVKK486 pKa = 9.79IPSTFDD492 pKa = 3.09LSFGMFDD499 pKa = 3.64SLL501 pKa = 5.05

Molecular weight: 55.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2639

96

604

377.0

41.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.267 ± 0.412

2.387 ± 0.709

6.631 ± 0.487

6.328 ± 0.649

4.888 ± 0.257

8.867 ± 1.121

2.728 ± 0.263

2.804 ± 0.287

4.888 ± 0.695

8.147 ± 0.595

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.743 ± 0.294

3.297 ± 0.65

7.768 ± 1.3

3.789 ± 0.486

6.859 ± 0.732

8.45 ± 0.66

5.532 ± 0.668

6.063 ± 0.81

1.402 ± 0.305

2.16 ± 0.355
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski