Apaloderma vittatum (Bar-tailed trogon)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria; Di

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7903 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A091NNV1|A0A091NNV1_APAVI Uncharacterized protein (Fragment) OS=Apaloderma vittatum OX=57397 GN=N311_05124 PE=4 SV=1
SS1 pKa = 7.12RR2 pKa = 11.84LTWLEE7 pKa = 3.51NSGVGFSLDD16 pKa = 3.46YY17 pKa = 9.24PTISLHH23 pKa = 6.08AVSRR27 pKa = 11.84DD28 pKa = 3.0LSAYY32 pKa = 8.18PWEE35 pKa = 4.42HH36 pKa = 6.79LYY38 pKa = 11.74VMVNAKK44 pKa = 10.3FEE46 pKa = 4.48EE47 pKa = 4.52EE48 pKa = 4.12TKK50 pKa = 10.07EE51 pKa = 4.02APVAEE56 pKa = 4.68GEE58 pKa = 4.41EE59 pKa = 4.46EE60 pKa = 4.74DD61 pKa = 6.13DD62 pKa = 5.21SDD64 pKa = 6.0DD65 pKa = 4.07DD66 pKa = 4.36SEE68 pKa = 5.15PIAEE72 pKa = 4.16FRR74 pKa = 11.84FVPSDD79 pKa = 3.36KK80 pKa = 10.88SALEE84 pKa = 3.78AMFAAMCEE92 pKa = 4.38CQALHH97 pKa = 7.41PDD99 pKa = 4.21PDD101 pKa = 5.77DD102 pKa = 4.05EE103 pKa = 7.61DD104 pKa = 4.46SDD106 pKa = 3.76NDD108 pKa = 3.97YY109 pKa = 11.37EE110 pKa = 4.59GEE112 pKa = 4.16EE113 pKa = 4.41YY114 pKa = 10.56DD115 pKa = 4.4VEE117 pKa = 4.26AHH119 pKa = 5.75EE120 pKa = 5.4LEE122 pKa = 5.33HH123 pKa = 8.4GDD125 pKa = 3.1IPSFYY130 pKa = 9.42TYY132 pKa = 11.03EE133 pKa = 4.17EE134 pKa = 4.58GLSHH138 pKa = 6.9LTAEE142 pKa = 4.71GQATLEE148 pKa = 4.11RR149 pKa = 11.84LEE151 pKa = 4.74GMLAQSVSSQYY162 pKa = 11.66NMAGVRR168 pKa = 11.84TEE170 pKa = 3.88DD171 pKa = 3.84SIRR174 pKa = 11.84EE175 pKa = 4.08YY176 pKa = 10.91EE177 pKa = 4.67DD178 pKa = 3.35GMEE181 pKa = 4.02VDD183 pKa = 3.84VAPVVAGQFEE193 pKa = 4.42DD194 pKa = 5.26AEE196 pKa = 4.32VDD198 pKa = 3.59HH199 pKa = 7.08

Molecular weight: 22.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A091NKP0|A0A091NKP0_APAVI 6-phosphofructo-2-kinase/fructose-2 6-bisphosphatase 2 (Fragment) OS=Apaloderma vittatum OX=57397 GN=N311_11513 PE=4 SV=1
GG1 pKa = 7.26KK2 pKa = 10.29GRR4 pKa = 11.84EE5 pKa = 4.21GKK7 pKa = 10.25GRR9 pKa = 11.84AGKK12 pKa = 10.14GRR14 pKa = 11.84AGKK17 pKa = 10.12GRR19 pKa = 11.84AGKK22 pKa = 10.12GRR24 pKa = 11.84AGKK27 pKa = 10.12GRR29 pKa = 11.84AGKK32 pKa = 10.12GRR34 pKa = 11.84AGKK37 pKa = 10.12GRR39 pKa = 11.84AGKK42 pKa = 10.12GRR44 pKa = 11.84AGKK47 pKa = 10.12GRR49 pKa = 11.84AGKK52 pKa = 10.14GRR54 pKa = 11.84AGKK57 pKa = 10.28GG58 pKa = 3.09

Molecular weight: 5.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7903

0

7903

3310111

33

5821

418.8

47.09

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.393 ± 0.021

2.233 ± 0.024

5.065 ± 0.021

7.216 ± 0.035

3.919 ± 0.02

5.829 ± 0.038

2.518 ± 0.014

5.023 ± 0.024

6.511 ± 0.034

9.696 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.236 ± 0.012

4.158 ± 0.017

5.215 ± 0.034

4.654 ± 0.03

5.191 ± 0.022

8.209 ± 0.04

5.394 ± 0.02

6.317 ± 0.024

1.196 ± 0.011

3.021 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski