Frog adenovirus 1 (strain ATCC VR-896) (FrAdV-1)

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Siadenovirus; Frog siadenovirus A

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 23 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9IIG5|Q9IIG5_ADEF1 ORF7 OS=Frog adenovirus 1 (strain ATCC VR-896) OX=114102 PE=4 SV=1
MM1 pKa = 6.31SWYY4 pKa = 9.74RR5 pKa = 11.84VRR7 pKa = 11.84YY8 pKa = 8.87VDD10 pKa = 4.83EE11 pKa = 4.78NEE13 pKa = 4.0EE14 pKa = 4.45DD15 pKa = 3.85PPSLHH20 pKa = 6.8EE21 pKa = 5.16LFDD24 pKa = 4.63LEE26 pKa = 4.36PTSPVQEE33 pKa = 4.2NAVSSSQPFYY43 pKa = 11.07SGRR46 pKa = 11.84KK47 pKa = 8.6YY48 pKa = 10.59DD49 pKa = 4.18IPPCMSEE56 pKa = 3.78HH57 pKa = 5.77QFISVYY63 pKa = 10.2QKK65 pKa = 10.67PGDD68 pKa = 3.89DD69 pKa = 3.48EE70 pKa = 6.0DD71 pKa = 4.46YY72 pKa = 11.76VFIEE76 pKa = 4.26NSGKK80 pKa = 9.57MKK82 pKa = 10.38LSEE85 pKa = 4.62YY86 pKa = 9.38NFSWAFFHH94 pKa = 7.41SGVDD98 pKa = 3.22QMIIYY103 pKa = 10.1FPDD106 pKa = 3.05WFAKK110 pKa = 9.94LFKK113 pKa = 10.52EE114 pKa = 4.96FIYY117 pKa = 10.49HH118 pKa = 7.26KK119 pKa = 10.33FRR121 pKa = 11.84NDD123 pKa = 2.88TEE125 pKa = 4.02LQYY128 pKa = 10.84QIEE131 pKa = 4.44SEE133 pKa = 4.16DD134 pKa = 4.5GITKK138 pKa = 10.03ILFTDD143 pKa = 3.47SRR145 pKa = 11.84SWPPVLACFVWQCSANGLDD164 pKa = 3.95FFEE167 pKa = 4.49LVSWDD172 pKa = 3.54STDD175 pKa = 5.06AEE177 pKa = 4.09IQKK180 pKa = 8.56TVFAA184 pKa = 5.47

Molecular weight: 21.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9IIH8|Q9IIH8_ADEF1 PVII OS=Frog adenovirus 1 (strain ATCC VR-896) OX=114102 PE=3 SV=1
MM1 pKa = 7.55FEE3 pKa = 3.97NLAPRR8 pKa = 11.84KK9 pKa = 9.92GITQIRR15 pKa = 11.84PKK17 pKa = 10.25ISYY20 pKa = 9.95NKK22 pKa = 8.83EE23 pKa = 3.55LRR25 pKa = 11.84GGFLPLLVPIIAAAISAAPGIAGAVLAAKK54 pKa = 9.74NHH56 pKa = 5.2NN57 pKa = 3.69

Molecular weight: 5.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

23

0

23

8125

57

1108

353.3

39.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.785 ± 0.476

1.908 ± 0.365

4.812 ± 0.246

5.858 ± 0.559

4.985 ± 0.27

5.354 ± 0.559

1.883 ± 0.225

5.969 ± 0.39

5.932 ± 0.729

9.772 ± 0.661

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.363 ± 0.184

6.486 ± 0.421

5.342 ± 0.27

4.086 ± 0.299

4.517 ± 0.439

7.569 ± 0.405

6.178 ± 0.374

6.166 ± 0.491

1.268 ± 0.151

3.766 ± 0.335
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski