Amino acid dipepetide frequency for Diachasmimorpha longicaudata rhabdovirus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
1.259AlaAla: 1.259 ± 0.289
1.763AlaCys: 1.763 ± 0.481
1.511AlaAsp: 1.511 ± 0.366
2.519AlaGlu: 2.519 ± 0.764
0.504AlaPhe: 0.504 ± 0.307
3.023AlaGly: 3.023 ± 0.86
0.756AlaHis: 0.756 ± 0.37
2.015AlaIle: 2.015 ± 0.926
3.526AlaLys: 3.526 ± 0.962
2.519AlaLeu: 2.519 ± 1.269
1.008AlaMet: 1.008 ± 0.471
1.511AlaAsn: 1.511 ± 0.645
0.504AlaPro: 0.504 ± 0.28
3.023AlaGln: 3.023 ± 1.004
1.511AlaArg: 1.511 ± 0.74
1.511AlaSer: 1.511 ± 0.271
3.023AlaThr: 3.023 ± 1.259
3.023AlaVal: 3.023 ± 1.097
0.756AlaTrp: 0.756 ± 0.37
1.259AlaTyr: 1.259 ± 0.713
0.0AlaXaa: 0.0 ± 0.0
Cys
0.252CysAla: 0.252 ± 0.396
0.504CysCys: 0.504 ± 0.462
0.756CysAsp: 0.756 ± 0.461
1.259CysGlu: 1.259 ± 0.564
0.252CysPhe: 0.252 ± 0.335
0.252CysGly: 0.252 ± 0.154
0.756CysHis: 0.756 ± 0.304
2.015CysIle: 2.015 ± 0.382
1.008CysLys: 1.008 ± 0.614
2.519CysLeu: 2.519 ± 0.869
0.252CysMet: 0.252 ± 0.396
0.756CysAsn: 0.756 ± 0.5
1.763CysPro: 1.763 ± 1.004
0.504CysGln: 0.504 ± 0.689
1.259CysArg: 1.259 ± 0.564
1.259CysSer: 1.259 ± 0.41
0.504CysThr: 0.504 ± 0.351
1.259CysVal: 1.259 ± 0.511
1.008CysTrp: 1.008 ± 0.391
1.259CysTyr: 1.259 ± 0.521
0.0CysXaa: 0.0 ± 0.0
Asp
1.008AspAla: 1.008 ± 0.561
0.756AspCys: 0.756 ± 0.393
0.756AspAsp: 0.756 ± 0.704
1.511AspGlu: 1.511 ± 0.678
2.015AspPhe: 2.015 ± 0.871
2.771AspGly: 2.771 ± 0.537
2.771AspHis: 2.771 ± 0.875
4.282AspIle: 4.282 ± 0.938
3.778AspLys: 3.778 ± 0.719
5.038AspLeu: 5.038 ± 1.86
1.259AspMet: 1.259 ± 0.618
2.267AspAsn: 2.267 ± 0.494
3.778AspPro: 3.778 ± 1.157
1.763AspGln: 1.763 ± 0.877
2.015AspArg: 2.015 ± 1.073
4.786AspSer: 4.786 ± 0.695
2.267AspThr: 2.267 ± 0.665
1.511AspVal: 1.511 ± 1.023
0.252AspTrp: 0.252 ± 0.154
2.267AspTyr: 2.267 ± 0.67
0.0AspXaa: 0.0 ± 0.0
Glu
1.763GluAla: 1.763 ± 0.689
2.015GluCys: 2.015 ± 0.797
3.023GluAsp: 3.023 ± 0.615
4.786GluGlu: 4.786 ± 1.084
3.023GluPhe: 3.023 ± 1.113
3.275GluGly: 3.275 ± 0.806
1.511GluHis: 1.511 ± 0.67
3.526GluIle: 3.526 ± 0.983
4.03GluLys: 4.03 ± 0.994
6.549GluLeu: 6.549 ± 1.088
1.763GluMet: 1.763 ± 0.746
3.023GluAsn: 3.023 ± 0.49
0.252GluPro: 0.252 ± 0.345
2.015GluGln: 2.015 ± 0.403
2.267GluArg: 2.267 ± 0.839
5.038GluSer: 5.038 ± 1.045
2.519GluThr: 2.519 ± 0.904
4.534GluVal: 4.534 ± 1.385
0.504GluTrp: 0.504 ± 0.28
1.511GluTyr: 1.511 ± 0.532
0.0GluXaa: 0.0 ± 0.0
Phe
0.756PheAla: 0.756 ± 0.37
0.756PheCys: 0.756 ± 1.005
1.763PheAsp: 1.763 ± 0.813
0.504PheGlu: 0.504 ± 0.462
0.252PhePhe: 0.252 ± 0.501
2.267PheGly: 2.267 ± 0.685
0.756PheHis: 0.756 ± 0.5
4.534PheIle: 4.534 ± 0.948
4.282PheLys: 4.282 ± 1.799
4.282PheLeu: 4.282 ± 1.095
2.015PheMet: 2.015 ± 0.846
2.771PheAsn: 2.771 ± 0.309
2.771PhePro: 2.771 ± 0.86
3.778PheGln: 3.778 ± 1.314
1.259PheArg: 1.259 ± 0.529
4.282PheSer: 4.282 ± 0.731
0.756PheThr: 0.756 ± 0.412
2.267PheVal: 2.267 ± 0.715
0.252PheTrp: 0.252 ± 0.154
1.511PheTyr: 1.511 ± 0.444
0.0PheXaa: 0.0 ± 0.0
Gly
3.023GlyAla: 3.023 ± 1.461
0.504GlyCys: 0.504 ± 0.351
2.267GlyAsp: 2.267 ± 0.376
2.519GlyGlu: 2.519 ± 1.782
3.023GlyPhe: 3.023 ± 0.669
2.519GlyGly: 2.519 ± 0.958
1.763GlyHis: 1.763 ± 0.54
3.526GlyIle: 3.526 ± 1.334
3.275GlyLys: 3.275 ± 0.521
4.282GlyLeu: 4.282 ± 1.36
0.504GlyMet: 0.504 ± 0.443
2.771GlyAsn: 2.771 ± 0.847
2.015GlyPro: 2.015 ± 0.597
2.519GlyGln: 2.519 ± 0.388
1.511GlyArg: 1.511 ± 0.793
6.045GlySer: 6.045 ± 1.407
2.015GlyThr: 2.015 ± 0.509
2.771GlyVal: 2.771 ± 1.38
1.511GlyTrp: 1.511 ± 0.678
3.275GlyTyr: 3.275 ± 1.161
0.0GlyXaa: 0.0 ± 0.0
His
1.008HisAla: 1.008 ± 0.478
0.252HisCys: 0.252 ± 0.154
1.008HisAsp: 1.008 ± 0.417
2.015HisGlu: 2.015 ± 1.042
1.511HisPhe: 1.511 ± 0.366
1.008HisGly: 1.008 ± 0.561
2.015HisHis: 2.015 ± 0.403
1.763HisIle: 1.763 ± 0.356
1.259HisLys: 1.259 ± 0.446
5.29HisLeu: 5.29 ± 1.145
1.008HisMet: 1.008 ± 0.448
1.008HisAsn: 1.008 ± 0.702
2.015HisPro: 2.015 ± 0.789
0.504HisGln: 0.504 ± 0.28
1.008HisArg: 1.008 ± 0.391
1.259HisSer: 1.259 ± 0.289
1.511HisThr: 1.511 ± 0.695
2.267HisVal: 2.267 ± 0.494
0.252HisTrp: 0.252 ± 0.399
0.756HisTyr: 0.756 ± 0.434
0.0HisXaa: 0.0 ± 0.0
Ile
3.275IleAla: 3.275 ± 1.49
1.763IleCys: 1.763 ± 0.877
4.282IleAsp: 4.282 ± 1.759
4.03IleGlu: 4.03 ± 0.627
4.03IlePhe: 4.03 ± 1.2
5.038IleGly: 5.038 ± 0.901
0.504IleHis: 0.504 ± 0.307
5.542IleIle: 5.542 ± 0.882
5.542IleLys: 5.542 ± 1.455
6.801IleLeu: 6.801 ± 0.913
1.008IleMet: 1.008 ± 0.492
3.526IleAsn: 3.526 ± 1.31
5.038IlePro: 5.038 ± 0.585
4.282IleGln: 4.282 ± 0.556
3.275IleArg: 3.275 ± 0.886
7.305IleSer: 7.305 ± 0.564
4.786IleThr: 4.786 ± 0.683
2.771IleVal: 2.771 ± 1.348
1.008IleTrp: 1.008 ± 0.391
2.519IleTyr: 2.519 ± 1.774
0.0IleXaa: 0.0 ± 0.0
Lys
3.526LysAla: 3.526 ± 0.883
0.756LysCys: 0.756 ± 0.461
2.015LysAsp: 2.015 ± 0.773
4.282LysGlu: 4.282 ± 1.2
3.023LysPhe: 3.023 ± 0.542
3.275LysGly: 3.275 ± 1.468
2.015LysHis: 2.015 ± 0.774
5.542LysIle: 5.542 ± 0.988
6.297LysLys: 6.297 ± 2.368
5.793LysLeu: 5.793 ± 0.912
2.519LysMet: 2.519 ± 1.233
2.771LysAsn: 2.771 ± 0.718
2.519LysPro: 2.519 ± 0.904
2.015LysGln: 2.015 ± 0.543
3.526LysArg: 3.526 ± 1.193
5.542LysSer: 5.542 ± 0.772
4.534LysThr: 4.534 ± 1.385
3.526LysVal: 3.526 ± 0.863
0.756LysTrp: 0.756 ± 0.393
1.511LysTyr: 1.511 ± 1.025
0.0LysXaa: 0.0 ± 0.0
Leu
5.038LeuAla: 5.038 ± 1.285
1.763LeuCys: 1.763 ± 0.803
5.038LeuAsp: 5.038 ± 1.292
6.297LeuGlu: 6.297 ± 0.743
4.786LeuPhe: 4.786 ± 0.599
4.534LeuGly: 4.534 ± 1.205
2.015LeuHis: 2.015 ± 0.773
9.068LeuIle: 9.068 ± 1.801
7.557LeuLys: 7.557 ± 1.457
11.335LeuLeu: 11.335 ± 3.546
3.275LeuMet: 3.275 ± 0.976
6.045LeuAsn: 6.045 ± 1.598
4.03LeuPro: 4.03 ± 1.402
1.763LeuGln: 1.763 ± 0.837
4.03LeuArg: 4.03 ± 0.739
9.824LeuSer: 9.824 ± 1.276
8.06LeuThr: 8.06 ± 1.604
5.038LeuVal: 5.038 ± 0.856
1.259LeuTrp: 1.259 ± 0.768
6.045LeuTyr: 6.045 ± 1.107
0.0LeuXaa: 0.0 ± 0.0
Met
1.008MetAla: 1.008 ± 0.391
0.504MetCys: 0.504 ± 0.28
2.519MetAsp: 2.519 ± 0.671
2.519MetGlu: 2.519 ± 1.274
1.259MetPhe: 1.259 ± 0.41
1.763MetGly: 1.763 ± 0.667
0.252MetHis: 0.252 ± 0.335
2.267MetIle: 2.267 ± 1.0
0.756MetLys: 0.756 ± 0.436
2.267MetLeu: 2.267 ± 0.623
1.511MetMet: 1.511 ± 0.271
0.756MetAsn: 0.756 ± 0.352
0.0MetPro: 0.0 ± 0.0
0.504MetGln: 0.504 ± 0.365
1.511MetArg: 1.511 ± 0.613
3.526MetSer: 3.526 ± 0.353
1.511MetThr: 1.511 ± 0.83
1.259MetVal: 1.259 ± 1.015
1.008MetTrp: 1.008 ± 0.367
1.763MetTyr: 1.763 ± 0.481
0.0MetXaa: 0.0 ± 0.0
Asn
1.259AsnAla: 1.259 ± 0.316
1.008AsnCys: 1.008 ± 0.536
2.771AsnAsp: 2.771 ± 1.342
1.259AsnGlu: 1.259 ± 0.446
2.519AsnPhe: 2.519 ± 0.879
2.519AsnGly: 2.519 ± 0.541
1.763AsnHis: 1.763 ± 0.813
3.778AsnIle: 3.778 ± 1.147
2.267AsnLys: 2.267 ± 0.759
5.793AsnLeu: 5.793 ± 1.447
1.511AsnMet: 1.511 ± 0.534
2.015AsnAsn: 2.015 ± 1.086
2.771AsnPro: 2.771 ± 1.213
1.511AsnGln: 1.511 ± 0.469
1.763AsnArg: 1.763 ± 0.837
3.526AsnSer: 3.526 ± 0.556
3.526AsnThr: 3.526 ± 1.454
2.267AsnVal: 2.267 ± 0.685
1.763AsnTrp: 1.763 ± 0.816
2.519AsnTyr: 2.519 ± 1.427
0.0AsnXaa: 0.0 ± 0.0
Pro
1.259ProAla: 1.259 ± 0.289
0.252ProCys: 0.252 ± 0.399
2.771ProAsp: 2.771 ± 0.464
2.771ProGlu: 2.771 ± 0.786
1.511ProPhe: 1.511 ± 0.699
1.511ProGly: 1.511 ± 0.271
1.259ProHis: 1.259 ± 0.561
4.534ProIle: 4.534 ± 1.674
2.015ProLys: 2.015 ± 0.691
6.801ProLeu: 6.801 ± 1.435
0.756ProMet: 0.756 ± 0.436
1.763ProAsn: 1.763 ± 0.567
3.778ProPro: 3.778 ± 0.877
1.511ProGln: 1.511 ± 0.645
2.015ProArg: 2.015 ± 0.954
6.297ProSer: 6.297 ± 2.142
3.526ProThr: 3.526 ± 1.057
3.526ProVal: 3.526 ± 1.038
0.0ProTrp: 0.0 ± 0.0
1.259ProTyr: 1.259 ± 0.407
0.0ProXaa: 0.0 ± 0.0
Gln
1.763GlnAla: 1.763 ± 0.613
0.756GlnCys: 0.756 ± 0.569
2.267GlnAsp: 2.267 ± 0.572
1.763GlnGlu: 1.763 ± 0.587
1.511GlnPhe: 1.511 ± 0.5
1.511GlnGly: 1.511 ± 0.629
1.511GlnHis: 1.511 ± 0.548
2.267GlnIle: 2.267 ± 1.103
1.763GlnLys: 1.763 ± 0.877
5.038GlnLeu: 5.038 ± 0.472
0.756GlnMet: 0.756 ± 0.392
1.511GlnAsn: 1.511 ± 0.868
0.756GlnPro: 0.756 ± 0.393
1.763GlnGln: 1.763 ± 0.83
1.763GlnArg: 1.763 ± 0.639
3.778GlnSer: 3.778 ± 1.147
3.275GlnThr: 3.275 ± 0.725
2.267GlnVal: 2.267 ± 1.276
0.504GlnTrp: 0.504 ± 0.28
1.511GlnTyr: 1.511 ± 0.548
0.0GlnXaa: 0.0 ± 0.0
Arg
1.259ArgAla: 1.259 ± 0.969
0.756ArgCys: 0.756 ± 0.304
2.267ArgAsp: 2.267 ± 0.583
4.534ArgGlu: 4.534 ± 0.876
0.756ArgPhe: 0.756 ± 0.461
2.015ArgGly: 2.015 ± 0.612
1.008ArgHis: 1.008 ± 0.444
3.275ArgIle: 3.275 ± 1.64
3.778ArgLys: 3.778 ± 1.299
3.526ArgLeu: 3.526 ± 1.403
1.259ArgMet: 1.259 ± 0.768
1.511ArgAsn: 1.511 ± 0.271
2.267ArgPro: 2.267 ± 1.08
1.511ArgGln: 1.511 ± 0.597
2.267ArgArg: 2.267 ± 1.844
2.519ArgSer: 2.519 ± 0.961
2.015ArgThr: 2.015 ± 0.907
1.763ArgVal: 1.763 ± 0.524
1.259ArgTrp: 1.259 ± 0.41
1.763ArgTyr: 1.763 ± 0.739
0.0ArgXaa: 0.0 ± 0.0
Ser
2.267SerAla: 2.267 ± 0.519
1.511SerCys: 1.511 ± 1.234
3.778SerAsp: 3.778 ± 1.014
5.038SerGlu: 5.038 ± 0.935
4.282SerPhe: 4.282 ± 1.799
4.282SerGly: 4.282 ± 1.075
2.015SerHis: 2.015 ± 0.81
7.053SerIle: 7.053 ± 0.631
4.282SerLys: 4.282 ± 1.346
13.602SerLeu: 13.602 ± 3.519
2.519SerMet: 2.519 ± 0.459
4.03SerAsn: 4.03 ± 0.892
6.549SerPro: 6.549 ± 1.047
3.778SerGln: 3.778 ± 0.862
3.023SerArg: 3.023 ± 0.674
12.343SerSer: 12.343 ± 2.096
5.038SerThr: 5.038 ± 1.576
5.542SerVal: 5.542 ± 1.489
2.015SerTrp: 2.015 ± 0.736
3.275SerTyr: 3.275 ± 0.786
0.0SerXaa: 0.0 ± 0.0
Thr
2.015ThrAla: 2.015 ± 0.757
1.008ThrCys: 1.008 ± 0.417
2.267ThrAsp: 2.267 ± 0.558
2.519ThrGlu: 2.519 ± 1.044
2.267ThrPhe: 2.267 ± 0.797
2.519ThrGly: 2.519 ± 0.993
2.015ThrHis: 2.015 ± 0.382
4.282ThrIle: 4.282 ± 0.445
3.526ThrLys: 3.526 ± 1.311
6.297ThrLeu: 6.297 ± 0.815
2.015ThrMet: 2.015 ± 0.973
3.526ThrAsn: 3.526 ± 0.909
3.023ThrPro: 3.023 ± 1.206
1.763ThrGln: 1.763 ± 0.307
2.519ThrArg: 2.519 ± 0.944
7.305ThrSer: 7.305 ± 2.274
4.282ThrThr: 4.282 ± 1.074
4.03ThrVal: 4.03 ± 0.626
1.008ThrTrp: 1.008 ± 0.444
1.763ThrTyr: 1.763 ± 1.213
0.0ThrXaa: 0.0 ± 0.0
Val
2.519ValAla: 2.519 ± 0.7
1.763ValCys: 1.763 ± 0.608
3.778ValAsp: 3.778 ± 0.63
3.275ValGlu: 3.275 ± 0.561
1.763ValPhe: 1.763 ± 0.608
3.023ValGly: 3.023 ± 0.933
1.763ValHis: 1.763 ± 0.513
3.526ValIle: 3.526 ± 1.529
3.275ValLys: 3.275 ± 1.742
4.534ValLeu: 4.534 ± 1.016
2.519ValMet: 2.519 ± 1.466
2.771ValAsn: 2.771 ± 1.053
2.519ValPro: 2.519 ± 0.87
1.008ValGln: 1.008 ± 0.727
1.763ValArg: 1.763 ± 1.022
5.038ValSer: 5.038 ± 1.128
4.786ValThr: 4.786 ± 1.496
1.763ValVal: 1.763 ± 0.797
0.504ValTrp: 0.504 ± 0.307
0.756ValTyr: 0.756 ± 0.304
0.0ValXaa: 0.0 ± 0.0
Trp
0.756TrpAla: 0.756 ± 0.37
0.252TrpCys: 0.252 ± 0.154
0.504TrpAsp: 0.504 ± 0.307
1.763TrpGlu: 1.763 ± 0.816
0.756TrpPhe: 0.756 ± 0.37
1.511TrpGly: 1.511 ± 0.494
0.0TrpHis: 0.0 ± 0.0
1.763TrpIle: 1.763 ± 0.57
1.763TrpLys: 1.763 ± 0.524
1.511TrpLeu: 1.511 ± 0.904
0.252TrpMet: 0.252 ± 0.154
0.252TrpAsn: 0.252 ± 0.154
0.504TrpPro: 0.504 ± 0.307
0.0TrpGln: 0.0 ± 0.0
1.008TrpArg: 1.008 ± 0.367
1.259TrpSer: 1.259 ± 0.768
1.008TrpThr: 1.008 ± 0.444
0.756TrpVal: 0.756 ± 0.461
0.504TrpTrp: 0.504 ± 0.793
0.252TrpTyr: 0.252 ± 0.154
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.511TyrAla: 1.511 ± 0.678
0.756TyrCys: 0.756 ± 0.593
1.511TyrAsp: 1.511 ± 0.57
1.763TyrGlu: 1.763 ± 0.514
2.771TyrPhe: 2.771 ± 0.858
3.023TyrGly: 3.023 ± 0.557
2.267TyrHis: 2.267 ± 1.048
1.763TyrIle: 1.763 ± 0.82
1.763TyrLys: 1.763 ± 0.513
3.023TyrLeu: 3.023 ± 0.731
0.504TyrMet: 0.504 ± 0.351
3.526TyrAsn: 3.526 ± 0.694
2.267TyrPro: 2.267 ± 0.611
2.519TyrGln: 2.519 ± 1.694
2.015TyrArg: 2.015 ± 0.489
3.778TyrSer: 3.778 ± 1.031
1.008TyrThr: 1.008 ± 0.43
0.756TyrVal: 0.756 ± 0.436
0.252TyrTrp: 0.252 ± 0.154
2.267TyrTyr: 2.267 ± 0.665
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (3971 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski