Uliginosibacterium sp. TH139

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Zoogloeaceae; Uliginosibacterium; unclassified Uliginosibacterium

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3798 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2N4XMF3|A0A2N4XMF3_9RHOO tRNA (guanine-N(1)-)-methyltransferase OS=Uliginosibacterium sp. TH139 OX=2067453 GN=trmD PE=3 SV=1
MM1 pKa = 6.96NTTTAEE7 pKa = 4.13MPEE10 pKa = 4.32LLVFTDD16 pKa = 3.86SAANKK21 pKa = 9.38VKK23 pKa = 10.49EE24 pKa = 4.61LIDD27 pKa = 3.62EE28 pKa = 4.52EE29 pKa = 5.0GNAEE33 pKa = 3.83LKK35 pKa = 10.91LRR37 pKa = 11.84VFVSGGGCSGFQYY50 pKa = 10.93GFTFDD55 pKa = 4.28EE56 pKa = 4.93EE57 pKa = 4.6VNEE60 pKa = 6.15DD61 pKa = 3.46DD62 pKa = 4.95TQLQKK67 pKa = 11.41NGVTLLIDD75 pKa = 3.59SMSYY79 pKa = 10.23QYY81 pKa = 11.55LVGAEE86 pKa = 3.68IDD88 pKa = 3.85YY89 pKa = 11.03TDD91 pKa = 4.19GLEE94 pKa = 4.3GSQFVIRR101 pKa = 11.84NPNATTTCGCGSSFSVV117 pKa = 3.54

Molecular weight: 12.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2N4XTQ4|A0A2N4XTQ4_9RHOO Pectate lyase OS=Uliginosibacterium sp. TH139 OX=2067453 GN=pelA PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 9.97QPSVVRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.6RR14 pKa = 11.84THH16 pKa = 5.73GFLVRR21 pKa = 11.84MATKK25 pKa = 10.5GGRR28 pKa = 11.84KK29 pKa = 9.21VIAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.0GRR39 pKa = 11.84HH40 pKa = 4.92RR41 pKa = 11.84LAVV44 pKa = 3.37

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3798

0

3798

1251255

26

3399

329.5

35.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.373 ± 0.052

1.061 ± 0.015

4.988 ± 0.028

5.946 ± 0.042

3.62 ± 0.026

7.934 ± 0.035

2.182 ± 0.02

4.819 ± 0.03

3.437 ± 0.037

11.376 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.333 ± 0.02

2.77 ± 0.023

4.858 ± 0.032

3.956 ± 0.031

6.757 ± 0.042

6.082 ± 0.054

4.809 ± 0.044

7.021 ± 0.037

1.408 ± 0.018

2.271 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski