Mycoplana dimorpha

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Mycoplana

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4217 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T5BB28|A0A2T5BB28_MYCDI 2-oxoisovalerate dehydrogenase subunit alpha OS=Mycoplana dimorpha OX=28320 GN=C7449_103191 PE=3 SV=1
MM1 pKa = 7.48SMKK4 pKa = 10.41FLTSTALLALVAAPALAADD23 pKa = 3.74VVSYY27 pKa = 9.41QEE29 pKa = 4.11PAPQVEE35 pKa = 4.35ASPAFSWTGGYY46 pKa = 10.0VGLQGGGAWLNGDD59 pKa = 3.97FSIPGASASEE69 pKa = 4.17DD70 pKa = 3.69FNGGLIGGFAGYY82 pKa = 10.53NFQQGNWVFGVEE94 pKa = 4.59GDD96 pKa = 4.75VSYY99 pKa = 11.55NWNDD103 pKa = 2.96NNYY106 pKa = 10.61DD107 pKa = 3.32IFGTTAEE114 pKa = 4.28VGTDD118 pKa = 3.03VSGSVRR124 pKa = 11.84GRR126 pKa = 11.84AGYY129 pKa = 10.84AFDD132 pKa = 4.03SALIYY137 pKa = 9.43ATAGWTATRR146 pKa = 11.84GFVDD150 pKa = 3.65VPGFDD155 pKa = 4.23KK156 pKa = 10.38EE157 pKa = 4.7TEE159 pKa = 4.26VFNGWTIGAGADD171 pKa = 3.31YY172 pKa = 11.21AFTNNIFGRR181 pKa = 11.84AEE183 pKa = 3.47YY184 pKa = 9.99RR185 pKa = 11.84YY186 pKa = 10.58NDD188 pKa = 4.14FGDD191 pKa = 3.8KK192 pKa = 10.41DD193 pKa = 3.62IQGVNVDD200 pKa = 4.41LDD202 pKa = 3.57QHH204 pKa = 5.84QVTLGIGVKK213 pKa = 9.91FF214 pKa = 3.75

Molecular weight: 22.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T5AXF0|A0A2T5AXF0_MYCDI Molybdenum import ATP-binding protein ModC OS=Mycoplana dimorpha OX=28320 GN=modC PE=3 SV=1
MM1 pKa = 7.8RR2 pKa = 11.84PFALSKK8 pKa = 10.53AIRR11 pKa = 11.84PLALAATASLVAACQSSAPAPQASTAALPTMEE43 pKa = 5.7RR44 pKa = 11.84IALGANACWFKK55 pKa = 11.33SGDD58 pKa = 3.66AAFQAYY64 pKa = 9.5RR65 pKa = 11.84LAPEE69 pKa = 4.69LNSFSGKK76 pKa = 9.23PRR78 pKa = 11.84ILVVPRR84 pKa = 11.84RR85 pKa = 11.84SPEE88 pKa = 3.69ARR90 pKa = 11.84PLLVVQAEE98 pKa = 4.12GHH100 pKa = 5.96PARR103 pKa = 11.84LSAFGPLMDD112 pKa = 4.63EE113 pKa = 4.29PVSGRR118 pKa = 11.84IAADD122 pKa = 3.38VKK124 pKa = 10.16RR125 pKa = 11.84WAAGGAGCRR134 pKa = 3.99

Molecular weight: 13.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4217

0

4217

1319512

26

2827

312.9

33.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.453 ± 0.05

0.832 ± 0.014

5.633 ± 0.029

5.832 ± 0.034

3.843 ± 0.02

8.524 ± 0.037

2.032 ± 0.019

5.379 ± 0.027

3.4 ± 0.031

10.004 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.552 ± 0.017

2.662 ± 0.022

4.999 ± 0.027

3.024 ± 0.023

7.07 ± 0.041

5.425 ± 0.023

5.236 ± 0.028

7.514 ± 0.03

1.28 ± 0.016

2.306 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski