Orgyia pseudotsugata multicapsid polyhedrosis virus (OpMNPV)

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Baculoviridae; Alphabaculovirus

Average proteome isoelectric point is 7.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 152 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|O10335|TLP20_NPVOP Telokin-like protein 20 homolog OS=Orgyia pseudotsugata multicapsid polyhedrosis virus OX=262177 GN=ORF85 PE=4 SV=1
MM1 pKa = 7.14NLDD4 pKa = 3.13VPYY7 pKa = 10.42YY8 pKa = 10.41RR9 pKa = 11.84LGAHH13 pKa = 6.0EE14 pKa = 4.31RR15 pKa = 11.84VEE17 pKa = 4.27YY18 pKa = 10.52IPLKK22 pKa = 10.66LALNDD27 pKa = 4.21DD28 pKa = 4.57APPPAAHH35 pKa = 7.2EE36 pKa = 4.15YY37 pKa = 11.07AEE39 pKa = 4.07ARR41 pKa = 11.84AAGGEE46 pKa = 3.98AAPPAEE52 pKa = 4.15QWSAGVIVLIGLVAFVALFLLLYY75 pKa = 9.49VIYY78 pKa = 10.48YY79 pKa = 8.06FVILRR84 pKa = 11.84DD85 pKa = 3.55QPQYY89 pKa = 11.65SDD91 pKa = 6.01DD92 pKa = 4.14IDD94 pKa = 4.1NDD96 pKa = 3.75PPFAFNKK103 pKa = 9.81FDD105 pKa = 3.29

Molecular weight: 11.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|O10333|VP41_NPVOP Structural glycoprotein gp41 OS=Orgyia pseudotsugata multicapsid polyhedrosis virus OX=262177 GN=GP41 PE=2 SV=1
MM1 pKa = 7.32SLYY4 pKa = 10.09RR5 pKa = 11.84SKK7 pKa = 10.62VWCVYY12 pKa = 9.61IVRR15 pKa = 11.84RR16 pKa = 11.84DD17 pKa = 3.59DD18 pKa = 3.55GQLYY22 pKa = 9.53TGITSDD28 pKa = 3.33LSRR31 pKa = 11.84RR32 pKa = 11.84LGEE35 pKa = 3.82HH36 pKa = 5.75ARR38 pKa = 11.84GVGARR43 pKa = 11.84CLRR46 pKa = 11.84GAKK49 pKa = 9.65RR50 pKa = 11.84LQLLYY55 pKa = 10.38CSASAYY61 pKa = 8.86DD62 pKa = 4.32HH63 pKa = 6.26KK64 pKa = 9.85TAAQMEE70 pKa = 4.47YY71 pKa = 10.08HH72 pKa = 7.24LKK74 pKa = 10.29RR75 pKa = 11.84KK76 pKa = 8.71RR77 pKa = 11.84GKK79 pKa = 9.25YY80 pKa = 9.82FKK82 pKa = 10.73LRR84 pKa = 11.84LIKK87 pKa = 10.01AQPRR91 pKa = 11.84FLHH94 pKa = 6.15QYY96 pKa = 10.63LSADD100 pKa = 3.22KK101 pKa = 10.33PLRR104 pKa = 3.97

Molecular weight: 12.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

152

0

152

39323

51

1223

258.7

29.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.567 ± 0.244

2.546 ± 0.146

6.017 ± 0.152

4.987 ± 0.137

4.72 ± 0.141

4.394 ± 0.165

2.566 ± 0.113

4.12 ± 0.119

4.979 ± 0.219

9.643 ± 0.178

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.464 ± 0.077

5.544 ± 0.189

4.56 ± 0.258

3.843 ± 0.208

6.632 ± 0.222

5.676 ± 0.141

5.501 ± 0.161

7.53 ± 0.182

0.829 ± 0.067

3.883 ± 0.118
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski