Stenotrophobium rhamnosiphilum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Nevskiales; Sinobacteraceae; Stenotrophobium

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3581 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T5MDN3|A0A2T5MDN3_9GAMM UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Stenotrophobium rhamnosiphilum OX=2029166 GN=lpxC PE=3 SV=1
MM1 pKa = 7.58ALCPQCNQATSLSSDD16 pKa = 3.43NAWRR20 pKa = 11.84PFCSEE25 pKa = 3.7RR26 pKa = 11.84CKK28 pKa = 10.93LLDD31 pKa = 3.91LGEE34 pKa = 4.37WFGEE38 pKa = 4.6RR39 pKa = 11.84YY40 pKa = 7.42TVPVDD45 pKa = 3.48NLEE48 pKa = 4.18GDD50 pKa = 4.34LLQDD54 pKa = 4.4EE55 pKa = 5.65DD56 pKa = 4.23GTLQQ60 pKa = 3.65

Molecular weight: 6.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T5MFQ5|A0A2T5MFQ5_9GAMM Lipid A biosynthesis acyltransferase OS=Stenotrophobium rhamnosiphilum OX=2029166 GN=CJD38_08590 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.93GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.34GGRR28 pKa = 11.84LVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.92GRR39 pKa = 11.84KK40 pKa = 8.89RR41 pKa = 11.84LIPP44 pKa = 4.02

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3581

0

3581

1192750

27

2978

333.1

36.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.012 ± 0.045

0.939 ± 0.013

5.297 ± 0.026

5.394 ± 0.034

3.77 ± 0.026

7.91 ± 0.04

2.107 ± 0.021

5.367 ± 0.032

4.415 ± 0.031

10.244 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.454 ± 0.021

3.419 ± 0.03

4.91 ± 0.029

3.786 ± 0.023

6.007 ± 0.034

6.14 ± 0.04

5.523 ± 0.041

7.235 ± 0.032

1.393 ± 0.015

2.679 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski