Sphingosinicella ginsenosidimutans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingosinicellaceae; Sphingosinicella

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2928 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C6TS75|A0A5C6TS75_9SPHN Alpha-ketoglutarate dehydrogenase OS=Sphingosinicella ginsenosidimutans OX=1176539 GN=FRZ32_03830 PE=4 SV=1
MM1 pKa = 7.42TYY3 pKa = 10.71VVTDD7 pKa = 3.09ACIRR11 pKa = 11.84CKK13 pKa = 11.04YY14 pKa = 7.9MDD16 pKa = 4.38CVEE19 pKa = 4.32VCPVDD24 pKa = 3.79CFYY27 pKa = 11.19EE28 pKa = 4.58GEE30 pKa = 4.18NMLVINPNEE39 pKa = 4.6CIDD42 pKa = 4.23CGVCEE47 pKa = 4.44PEE49 pKa = 4.82CPAEE53 pKa = 5.13AILPDD58 pKa = 3.97TEE60 pKa = 4.55SGLEE64 pKa = 3.72KK65 pKa = 10.06WLEE68 pKa = 4.05LNSTYY73 pKa = 10.62SAEE76 pKa = 4.08WPNITRR82 pKa = 11.84KK83 pKa = 9.74KK84 pKa = 10.53DD85 pKa = 3.36SPADD89 pKa = 3.69ADD91 pKa = 3.59EE92 pKa = 4.86HH93 pKa = 7.63KK94 pKa = 11.2GEE96 pKa = 4.05EE97 pKa = 4.44GKK99 pKa = 10.35FDD101 pKa = 4.15KK102 pKa = 11.13YY103 pKa = 10.74FSPDD107 pKa = 3.43PGEE110 pKa = 4.36GDD112 pKa = 3.17

Molecular weight: 12.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C6TY93|A0A5C6TY93_9SPHN Hemerythrin domain-containing protein OS=Sphingosinicella ginsenosidimutans OX=1176539 GN=FRZ32_13695 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.84LVRR12 pKa = 11.84KK13 pKa = 9.15RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84KK29 pKa = 9.05VLAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84AKK41 pKa = 10.7LSAA44 pKa = 4.0

Molecular weight: 5.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2928

0

2928

924825

33

2259

315.9

34.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.179 ± 0.078

0.757 ± 0.013

5.991 ± 0.036

5.522 ± 0.046

3.45 ± 0.028

9.112 ± 0.042

2.007 ± 0.021

4.974 ± 0.027

2.268 ± 0.034

9.801 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.218 ± 0.021

2.401 ± 0.035

5.635 ± 0.038

2.987 ± 0.033

8.305 ± 0.051

4.892 ± 0.035

4.954 ± 0.036

6.954 ± 0.037

1.445 ± 0.023

2.147 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski