Sanxia permutotetra-like virus 1

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 7.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KHX9|A0A1L3KHX9_9VIRU Capsid protein OS=Sanxia permutotetra-like virus 1 OX=1923365 PE=3 SV=1
MM1 pKa = 7.05TANALDD7 pKa = 3.86GAAAKK12 pKa = 10.57SKK14 pKa = 10.85GPDD17 pKa = 3.99PIQTLHH23 pKa = 7.2LGDD26 pKa = 3.68NTLSLEE32 pKa = 4.26SRR34 pKa = 11.84NTPAFDD40 pKa = 4.14NISRR44 pKa = 11.84INLGLDD50 pKa = 2.99TFLTIRR56 pKa = 11.84TNFTLNAGDD65 pKa = 3.58ITSVVCSLKK74 pKa = 10.96SSDD77 pKa = 4.07GIPWNIPWTGVPVVDD92 pKa = 5.51KK93 pKa = 8.92FVCEE97 pKa = 4.15SGKK100 pKa = 10.4KK101 pKa = 9.78FYY103 pKa = 11.14SVTTNLLLRR112 pKa = 11.84CDD114 pKa = 3.96KK115 pKa = 10.93ARR117 pKa = 11.84SANFYY122 pKa = 10.46FEE124 pKa = 4.41WEE126 pKa = 4.04VDD128 pKa = 3.78FTTGFRR134 pKa = 11.84AGWNFVMQYY143 pKa = 9.19TLDD146 pKa = 5.07LIASPYY152 pKa = 10.54LNLSILPAIGYY163 pKa = 7.61GTQQYY168 pKa = 8.85QAILDD173 pKa = 4.11GLHH176 pKa = 6.72HH177 pKa = 7.11EE178 pKa = 4.5EE179 pKa = 4.94AQDD182 pKa = 3.68QAKK185 pKa = 8.55STQPVISNLYY195 pKa = 8.0PQLPTAPQVDD205 pKa = 3.7TRR207 pKa = 11.84MEE209 pKa = 4.55ADD211 pKa = 3.74LQQPPIKK218 pKa = 9.67TKK220 pKa = 10.9AKK222 pKa = 10.3LLTRR226 pKa = 11.84LFKK229 pKa = 10.83RR230 pKa = 11.84KK231 pKa = 9.2ISKK234 pKa = 9.57PP235 pKa = 3.42

Molecular weight: 26.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KHX9|A0A1L3KHX9_9VIRU Capsid protein OS=Sanxia permutotetra-like virus 1 OX=1923365 PE=3 SV=1
MM1 pKa = 7.86PNNKK5 pKa = 9.22NMNKK9 pKa = 10.07RR10 pKa = 11.84GQKK13 pKa = 9.39PQAKK17 pKa = 9.07KK18 pKa = 10.3QKK20 pKa = 10.17LPRR23 pKa = 11.84KK24 pKa = 7.25TVAGQPKK31 pKa = 9.94AVNLLMGVPVTGRR44 pKa = 11.84EE45 pKa = 3.81VTAILTASANKK56 pKa = 9.88TSVSYY61 pKa = 11.71NNTFNIASASPMLKK75 pKa = 9.86KK76 pKa = 10.39YY77 pKa = 10.14AAIYY81 pKa = 8.69EE82 pKa = 4.37SYY84 pKa = 10.24RR85 pKa = 11.84IKK87 pKa = 10.61SVSYY91 pKa = 10.37RR92 pKa = 11.84FIPDD96 pKa = 3.16EE97 pKa = 4.6SGLSSGNISLGIDD110 pKa = 3.36YY111 pKa = 10.94GKK113 pKa = 10.1MSGTLTRR120 pKa = 11.84EE121 pKa = 3.96QISRR125 pKa = 11.84LNPHH129 pKa = 6.05YY130 pKa = 10.5SGPIRR135 pKa = 11.84KK136 pKa = 7.79ITPWVTIHH144 pKa = 6.64PKK146 pKa = 9.97FVNKK150 pKa = 9.27DD151 pKa = 3.36TVRR154 pKa = 11.84YY155 pKa = 10.26SGDD158 pKa = 3.71DD159 pKa = 3.5SLLSAPFTLALVATCEE175 pKa = 4.28GKK177 pKa = 10.49SVDD180 pKa = 3.65RR181 pKa = 11.84VLGCVEE187 pKa = 3.6IQYY190 pKa = 9.03TLEE193 pKa = 4.02FQGILPP199 pKa = 4.34

Molecular weight: 21.87 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

1461

199

1027

487.0

54.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.666 ± 0.323

0.821 ± 0.176

5.818 ± 0.731

5.133 ± 0.991

3.217 ± 0.415

5.749 ± 0.339

1.574 ± 0.223

5.065 ± 0.606

7.255 ± 0.406

9.514 ± 0.477

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.669 ± 0.468

3.696 ± 1.072

5.886 ± 0.294

4.997 ± 0.406

5.133 ± 0.432

6.639 ± 0.854

7.666 ± 0.36

6.845 ± 0.669

1.506 ± 0.262

3.149 ± 0.369
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski