Rhizobium album

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6427 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2U2DY48|A0A2U2DY48_9RHIZ DUF3563 domain-containing protein OS=Rhizobium album OX=2182425 GN=DEM27_03525 PE=4 SV=1
MM1 pKa = 7.49NIKK4 pKa = 10.39SLLLGSAAALAVVSGAQAADD24 pKa = 4.21AIVAAEE30 pKa = 4.47PEE32 pKa = 3.93PMEE35 pKa = 4.1YY36 pKa = 10.8VRR38 pKa = 11.84VCDD41 pKa = 4.42AFGTGYY47 pKa = 10.47FYY49 pKa = 10.57IPGTEE54 pKa = 3.81TCLKK58 pKa = 9.41VGGRR62 pKa = 11.84VRR64 pKa = 11.84FDD66 pKa = 3.06VQAADD71 pKa = 3.78SYY73 pKa = 11.85SPNSDD78 pKa = 3.37NGWNTRR84 pKa = 11.84SRR86 pKa = 11.84AEE88 pKa = 4.51LYY90 pKa = 10.68LDD92 pKa = 3.62SASDD96 pKa = 3.65TEE98 pKa = 4.38YY99 pKa = 11.35GALKK103 pKa = 8.16TQIVARR109 pKa = 11.84WDD111 pKa = 3.24FDD113 pKa = 3.64GDD115 pKa = 4.15YY116 pKa = 11.32NDD118 pKa = 4.64GQHH121 pKa = 5.47TTSKK125 pKa = 10.77LIAANITLAGFLVGLADD142 pKa = 3.52SQYY145 pKa = 11.16TSFTGYY151 pKa = 10.87AGDD154 pKa = 4.93IINDD158 pKa = 3.53DD159 pKa = 3.83VIAYY163 pKa = 10.22GEE165 pKa = 4.32FEE167 pKa = 4.53VNQISYY173 pKa = 9.12TYY175 pKa = 10.7DD176 pKa = 3.14GGNGFTAVISLEE188 pKa = 4.18DD189 pKa = 3.87DD190 pKa = 3.31SRR192 pKa = 11.84TGDD195 pKa = 3.51DD196 pKa = 3.62YY197 pKa = 11.53MVDD200 pKa = 3.46VVGGIGYY207 pKa = 7.79STGTFGFKK215 pKa = 10.49VVGGYY220 pKa = 10.12DD221 pKa = 3.36EE222 pKa = 4.6SAEE225 pKa = 4.02EE226 pKa = 4.13GAIKK230 pKa = 10.53ARR232 pKa = 11.84LDD234 pKa = 3.72GNFGALSAFLMAGWNSDD251 pKa = 2.61GDD253 pKa = 4.37VVHH256 pKa = 7.01KK257 pKa = 8.36FAPSNFGGAAAGIGWGDD274 pKa = 3.33WAVWGGLGYY283 pKa = 10.66SFSDD287 pKa = 3.2TLAANLQLAYY297 pKa = 9.65TDD299 pKa = 4.09SEE301 pKa = 4.78VFAAAANVKK310 pKa = 8.52WNPVPGLLIQPEE322 pKa = 4.04ITYY325 pKa = 8.19TNWDD329 pKa = 4.52SIDD332 pKa = 3.5EE333 pKa = 4.3DD334 pKa = 3.35QWNGMVRR341 pKa = 11.84FQRR344 pKa = 11.84TFF346 pKa = 2.79

Molecular weight: 36.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2U2DRW5|A0A2U2DRW5_9RHIZ Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Rhizobium album OX=2182425 GN=ubiE PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 9.15RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATNGGQKK29 pKa = 9.78VLAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6427

0

6427

1993445

23

2835

310.2

33.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.965 ± 0.038

0.829 ± 0.008

5.789 ± 0.025

5.832 ± 0.024

3.899 ± 0.02

8.412 ± 0.023

2.003 ± 0.015

5.636 ± 0.023

3.688 ± 0.023

9.869 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.583 ± 0.016

2.816 ± 0.016

4.781 ± 0.02

3.132 ± 0.019

6.766 ± 0.032

5.718 ± 0.02

5.393 ± 0.018

7.316 ± 0.026

1.272 ± 0.012

2.303 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski