Schumannella sp. 10F1D-1

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Schumannella; unclassified Schumannella

Average proteome isoelectric point is 6.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3272 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A506Y1L2|A0A506Y1L2_9MICO Class I SAM-dependent methyltransferase OS=Schumannella sp. 10F1D-1 OX=2590779 GN=FJ657_06360 PE=4 SV=1
MM1 pKa = 7.64RR2 pKa = 11.84PARR5 pKa = 11.84ILIAALAAATLVTTLSGCALIDD27 pKa = 3.41TARR30 pKa = 11.84DD31 pKa = 3.12LGRR34 pKa = 11.84ALGGGGAPGSGGSVDD49 pKa = 4.01PDD51 pKa = 3.45YY52 pKa = 11.03DD53 pKa = 3.69TALDD57 pKa = 3.76EE58 pKa = 5.78LEE60 pKa = 4.81VGDD63 pKa = 5.69CFLEE67 pKa = 4.58PDD69 pKa = 4.63DD70 pKa = 6.11DD71 pKa = 4.47IEE73 pKa = 4.24TAIVDD78 pKa = 3.84CSDD81 pKa = 3.1EE82 pKa = 3.97HH83 pKa = 8.63DD84 pKa = 4.32YY85 pKa = 11.53EE86 pKa = 4.41VTALVTLEE94 pKa = 4.05GVDD97 pKa = 3.66YY98 pKa = 10.97PGDD101 pKa = 3.51IKK103 pKa = 11.12VDD105 pKa = 3.32KK106 pKa = 10.54LSRR109 pKa = 11.84ALCSQALTDD118 pKa = 4.02YY119 pKa = 11.37VGIPYY124 pKa = 9.88SDD126 pKa = 4.02SSLEE130 pKa = 4.01SWAWTPDD137 pKa = 3.01EE138 pKa = 5.85DD139 pKa = 3.6GWADD143 pKa = 3.44GDD145 pKa = 4.16HH146 pKa = 6.39VAVCTATDD154 pKa = 3.61YY155 pKa = 11.59YY156 pKa = 11.39YY157 pKa = 11.01DD158 pKa = 4.06VLDD161 pKa = 4.25QSVKK165 pKa = 10.44DD166 pKa = 3.66ARR168 pKa = 11.84II169 pKa = 3.32

Molecular weight: 17.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A506XVG2|A0A506XVG2_9MICO L-rhamnose mutarotase OS=Schumannella sp. 10F1D-1 OX=2590779 GN=FJ657_16105 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3272

0

3272

1081973

25

6143

330.7

35.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.19 ± 0.061

0.406 ± 0.009

6.364 ± 0.043

5.334 ± 0.049

2.923 ± 0.028

9.377 ± 0.051

1.843 ± 0.02

4.432 ± 0.036

2.041 ± 0.032

10.063 ± 0.068

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.483 ± 0.019

1.843 ± 0.03

5.501 ± 0.034

2.768 ± 0.025

7.385 ± 0.058

5.858 ± 0.043

6.136 ± 0.089

8.812 ± 0.036

1.408 ± 0.015

1.832 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski