Calidifontibacter indicus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Dermacoccaceae; Calidifontibacter

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3252 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3D9URX7|A0A3D9URX7_9MICO Quinol monooxygenase YgiN OS=Calidifontibacter indicus OX=419650 GN=DFJ65_3098 PE=4 SV=1
MM1 pKa = 7.9SDD3 pKa = 3.62LEE5 pKa = 4.32YY6 pKa = 10.16PADD9 pKa = 3.54LRR11 pKa = 11.84YY12 pKa = 8.63TSDD15 pKa = 3.63HH16 pKa = 6.2EE17 pKa = 4.5WVKK20 pKa = 10.46EE21 pKa = 3.84QGDD24 pKa = 4.0GVVRR28 pKa = 11.84VGITAFAQDD37 pKa = 3.34ALGDD41 pKa = 3.82VVYY44 pKa = 11.14VSLPGVGDD52 pKa = 3.71TVSAGDD58 pKa = 3.28SCGEE62 pKa = 4.07VEE64 pKa = 4.44STKK67 pKa = 10.7SVSDD71 pKa = 4.11LYY73 pKa = 11.49SPLEE77 pKa = 4.26GEE79 pKa = 4.22VTAVNEE85 pKa = 4.17QLDD88 pKa = 4.1ATPEE92 pKa = 4.14LVNSDD97 pKa = 4.01PYY99 pKa = 11.46GEE101 pKa = 3.77GWMYY105 pKa = 9.74EE106 pKa = 4.28LKK108 pKa = 10.87VADD111 pKa = 4.08PAAVEE116 pKa = 3.92QLQDD120 pKa = 2.73VDD122 pKa = 4.35AYY124 pKa = 10.1KK125 pKa = 10.91SSLNN129 pKa = 3.58

Molecular weight: 13.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3D9UZ53|A0A3D9UZ53_9MICO Cell division ATP-binding protein FtsE OS=Calidifontibacter indicus OX=419650 GN=ftsE PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3252

0

3252

1062579

30

1617

326.7

35.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.729 ± 0.049

0.752 ± 0.011

6.548 ± 0.041

5.41 ± 0.043

2.876 ± 0.024

8.992 ± 0.039

2.2 ± 0.019

3.901 ± 0.028

2.55 ± 0.035

9.733 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.986 ± 0.017

2.062 ± 0.02

5.414 ± 0.026

3.208 ± 0.024

7.338 ± 0.047

5.588 ± 0.034

6.254 ± 0.038

8.988 ± 0.043

1.51 ± 0.018

1.959 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski