Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_641

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
14.296AlaAla: 14.296 ± 5.275
0.0AlaCys: 0.0 ± 0.0
7.524AlaAsp: 7.524 ± 2.216
2.257AlaGlu: 2.257 ± 1.127
3.01AlaPhe: 3.01 ± 1.382
5.267AlaGly: 5.267 ± 1.747
0.752AlaHis: 0.752 ± 0.538
3.01AlaIle: 3.01 ± 1.79
3.762AlaLys: 3.762 ± 3.305
7.524AlaLeu: 7.524 ± 1.521
3.01AlaMet: 3.01 ± 0.928
7.524AlaAsn: 7.524 ± 4.254
1.505AlaPro: 1.505 ± 0.679
3.762AlaGln: 3.762 ± 2.127
4.515AlaArg: 4.515 ± 1.431
8.277AlaSer: 8.277 ± 4.422
6.772AlaThr: 6.772 ± 2.878
8.277AlaVal: 8.277 ± 2.285
0.0AlaTrp: 0.0 ± 0.0
5.267AlaTyr: 5.267 ± 2.823
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.752CysAsp: 0.752 ± 0.538
0.752CysGlu: 0.752 ± 0.538
0.0CysPhe: 0.0 ± 0.0
0.752CysGly: 0.752 ± 0.719
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.752CysMet: 0.752 ± 0.719
0.752CysAsn: 0.752 ± 0.973
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.752CysArg: 0.752 ± 0.719
0.0CysSer: 0.0 ± 0.0
0.752CysThr: 0.752 ± 0.719
0.752CysVal: 0.752 ± 0.719
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.762AspAla: 3.762 ± 1.252
0.0AspCys: 0.0 ± 0.0
3.01AspAsp: 3.01 ± 1.737
4.515AspGlu: 4.515 ± 2.45
5.267AspPhe: 5.267 ± 2.531
3.01AspGly: 3.01 ± 1.457
0.752AspHis: 0.752 ± 0.538
3.01AspIle: 3.01 ± 1.567
2.257AspLys: 2.257 ± 1.446
4.515AspLeu: 4.515 ± 1.023
3.01AspMet: 3.01 ± 1.849
3.01AspAsn: 3.01 ± 2.204
2.257AspPro: 2.257 ± 1.768
1.505AspGln: 1.505 ± 0.924
2.257AspArg: 2.257 ± 1.785
5.267AspSer: 5.267 ± 2.889
2.257AspThr: 2.257 ± 0.959
3.01AspVal: 3.01 ± 1.737
0.0AspTrp: 0.0 ± 0.0
3.01AspTyr: 3.01 ± 0.971
0.0AspXaa: 0.0 ± 0.0
Glu
2.257GluAla: 2.257 ± 1.887
0.752GluCys: 0.752 ± 0.719
0.752GluAsp: 0.752 ± 0.719
3.01GluGlu: 3.01 ± 2.223
3.01GluPhe: 3.01 ± 2.99
1.505GluGly: 1.505 ± 1.642
2.257GluHis: 2.257 ± 1.291
2.257GluIle: 2.257 ± 0.959
0.0GluLys: 0.0 ± 0.0
3.01GluLeu: 3.01 ± 1.849
0.0GluMet: 0.0 ± 0.0
1.505GluAsn: 1.505 ± 0.872
0.752GluPro: 0.752 ± 1.141
3.762GluGln: 3.762 ± 1.088
3.01GluArg: 3.01 ± 0.636
2.257GluSer: 2.257 ± 2.059
2.257GluThr: 2.257 ± 1.309
3.01GluVal: 3.01 ± 2.175
0.752GluTrp: 0.752 ± 0.719
2.257GluTyr: 2.257 ± 0.992
0.0GluXaa: 0.0 ± 0.0
Phe
2.257PheAla: 2.257 ± 1.073
0.0PheCys: 0.0 ± 0.0
3.762PheAsp: 3.762 ± 1.355
0.752PheGlu: 0.752 ± 0.719
5.267PhePhe: 5.267 ± 1.709
6.772PheGly: 6.772 ± 2.017
2.257PheHis: 2.257 ± 0.947
0.752PheIle: 0.752 ± 0.538
2.257PheLys: 2.257 ± 0.947
3.01PheLeu: 3.01 ± 0.85
3.762PheMet: 3.762 ± 1.713
4.515PheAsn: 4.515 ± 1.895
2.257PhePro: 2.257 ± 0.992
2.257PheGln: 2.257 ± 0.963
3.01PheArg: 3.01 ± 1.976
0.752PheSer: 0.752 ± 0.538
3.762PheThr: 3.762 ± 1.299
3.762PheVal: 3.762 ± 3.257
0.752PheTrp: 0.752 ± 0.538
0.752PheTyr: 0.752 ± 0.538
0.0PheXaa: 0.0 ± 0.0
Gly
6.772GlyAla: 6.772 ± 3.46
0.0GlyCys: 0.0 ± 0.0
4.515GlyAsp: 4.515 ± 1.166
3.762GlyGlu: 3.762 ± 0.96
0.752GlyPhe: 0.752 ± 0.538
7.524GlyGly: 7.524 ± 1.743
2.257GlyHis: 2.257 ± 1.073
0.752GlyIle: 0.752 ± 0.719
3.762GlyLys: 3.762 ± 0.834
8.277GlyLeu: 8.277 ± 4.074
0.0GlyMet: 0.0 ± 0.0
3.762GlyAsn: 3.762 ± 1.024
2.257GlyPro: 2.257 ± 1.291
5.267GlyGln: 5.267 ± 1.603
3.01GlyArg: 3.01 ± 1.097
6.02GlySer: 6.02 ± 2.888
5.267GlyThr: 5.267 ± 2.977
7.524GlyVal: 7.524 ± 2.088
0.0GlyTrp: 0.0 ± 0.0
4.515GlyTyr: 4.515 ± 1.17
0.0GlyXaa: 0.0 ± 0.0
His
0.752HisAla: 0.752 ± 0.719
0.0HisCys: 0.0 ± 0.0
0.752HisAsp: 0.752 ± 0.538
0.752HisGlu: 0.752 ± 0.719
2.257HisPhe: 2.257 ± 0.992
3.01HisGly: 3.01 ± 1.358
0.0HisHis: 0.0 ± 0.0
0.752HisIle: 0.752 ± 0.719
1.505HisLys: 1.505 ± 1.438
3.762HisLeu: 3.762 ± 3.013
0.0HisMet: 0.0 ± 0.0
2.257HisAsn: 2.257 ± 1.073
1.505HisPro: 1.505 ± 1.314
0.0HisGln: 0.0 ± 0.0
0.752HisArg: 0.752 ± 1.141
0.752HisSer: 0.752 ± 0.538
0.0HisThr: 0.0 ± 0.0
0.752HisVal: 0.752 ± 0.538
0.0HisTrp: 0.0 ± 0.0
0.752HisTyr: 0.752 ± 0.538
0.0HisXaa: 0.0 ± 0.0
Ile
5.267IleAla: 5.267 ± 1.979
0.0IleCys: 0.0 ± 0.0
2.257IleAsp: 2.257 ± 0.959
0.752IleGlu: 0.752 ± 0.824
0.752IlePhe: 0.752 ± 0.824
4.515IleGly: 4.515 ± 2.087
0.0IleHis: 0.0 ± 0.0
0.752IleIle: 0.752 ± 0.538
2.257IleLys: 2.257 ± 1.597
2.257IleLeu: 2.257 ± 0.583
1.505IleMet: 1.505 ± 0.679
3.762IleAsn: 3.762 ± 1.916
1.505IlePro: 1.505 ± 1.076
2.257IleGln: 2.257 ± 1.614
3.762IleArg: 3.762 ± 0.834
0.752IleSer: 0.752 ± 0.538
2.257IleThr: 2.257 ± 1.291
3.762IleVal: 3.762 ± 1.355
0.0IleTrp: 0.0 ± 0.0
2.257IleTyr: 2.257 ± 0.959
0.0IleXaa: 0.0 ± 0.0
Lys
6.02LysAla: 6.02 ± 2.3
0.752LysCys: 0.752 ± 0.719
1.505LysAsp: 1.505 ± 2.282
4.515LysGlu: 4.515 ± 1.948
3.01LysPhe: 3.01 ± 1.358
4.515LysGly: 4.515 ± 1.573
1.505LysHis: 1.505 ± 1.314
2.257LysIle: 2.257 ± 1.436
0.752LysLys: 0.752 ± 0.719
2.257LysLeu: 2.257 ± 0.963
0.752LysMet: 0.752 ± 0.824
0.752LysAsn: 0.752 ± 0.824
1.505LysPro: 1.505 ± 1.254
0.752LysGln: 0.752 ± 0.824
2.257LysArg: 2.257 ± 1.291
1.505LysSer: 1.505 ± 0.715
3.762LysThr: 3.762 ± 1.252
1.505LysVal: 1.505 ± 0.924
0.0LysTrp: 0.0 ± 0.0
0.0LysTyr: 0.0 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
7.524LeuAla: 7.524 ± 1.144
0.0LeuCys: 0.0 ± 0.0
3.762LeuAsp: 3.762 ± 1.088
3.01LeuGlu: 3.01 ± 1.438
3.762LeuPhe: 3.762 ± 1.33
9.782LeuGly: 9.782 ± 1.918
1.505LeuHis: 1.505 ± 1.438
3.01LeuIle: 3.01 ± 1.444
3.01LeuLys: 3.01 ± 1.256
6.772LeuLeu: 6.772 ± 1.619
1.505LeuMet: 1.505 ± 0.669
6.772LeuAsn: 6.772 ± 1.425
6.772LeuPro: 6.772 ± 3.139
4.515LeuGln: 4.515 ± 0.98
6.02LeuArg: 6.02 ± 2.281
4.515LeuSer: 4.515 ± 1.17
2.257LeuThr: 2.257 ± 0.947
3.762LeuVal: 3.762 ± 1.471
2.257LeuTrp: 2.257 ± 1.291
3.01LeuTyr: 3.01 ± 1.141
0.0LeuXaa: 0.0 ± 0.0
Met
0.752MetAla: 0.752 ± 0.824
1.505MetCys: 1.505 ± 0.679
2.257MetAsp: 2.257 ± 0.963
0.752MetGlu: 0.752 ± 0.719
1.505MetPhe: 1.505 ± 1.076
0.752MetGly: 0.752 ± 0.538
0.752MetHis: 0.752 ± 0.719
0.752MetIle: 0.752 ± 0.824
2.257MetLys: 2.257 ± 1.309
4.515MetLeu: 4.515 ± 1.584
0.0MetMet: 0.0 ± 0.0
2.257MetAsn: 2.257 ± 2.089
1.505MetPro: 1.505 ± 1.196
1.505MetGln: 1.505 ± 0.679
1.505MetArg: 1.505 ± 1.196
1.505MetSer: 1.505 ± 1.649
0.752MetThr: 0.752 ± 0.719
0.752MetVal: 0.752 ± 0.538
0.0MetTrp: 0.0 ± 0.0
0.752MetTyr: 0.752 ± 0.538
0.0MetXaa: 0.0 ± 0.0
Asn
5.267AsnAla: 5.267 ± 2.574
0.0AsnCys: 0.0 ± 0.0
3.762AsnAsp: 3.762 ± 1.355
0.752AsnGlu: 0.752 ± 1.141
3.01AsnPhe: 3.01 ± 0.85
2.257AsnGly: 2.257 ± 1.614
0.752AsnHis: 0.752 ± 0.719
4.515AsnIle: 4.515 ± 2.087
2.257AsnLys: 2.257 ± 1.306
6.772AsnLeu: 6.772 ± 1.617
0.752AsnMet: 0.752 ± 0.702
3.762AsnAsn: 3.762 ± 1.732
3.762AsnPro: 3.762 ± 1.088
3.762AsnGln: 3.762 ± 1.383
3.01AsnArg: 3.01 ± 2.204
4.515AsnSer: 4.515 ± 1.569
3.01AsnThr: 3.01 ± 1.567
4.515AsnVal: 4.515 ± 2.579
1.505AsnTrp: 1.505 ± 0.715
1.505AsnTyr: 1.505 ± 1.076
0.0AsnXaa: 0.0 ± 0.0
Pro
3.01ProAla: 3.01 ± 2.152
0.0ProCys: 0.0 ± 0.0
2.257ProAsp: 2.257 ± 1.306
1.505ProGlu: 1.505 ± 0.679
2.257ProPhe: 2.257 ± 1.785
1.505ProGly: 1.505 ± 1.076
2.257ProHis: 2.257 ± 1.785
3.762ProIle: 3.762 ± 1.383
1.505ProLys: 1.505 ± 1.196
3.762ProLeu: 3.762 ± 1.941
1.505ProMet: 1.505 ± 0.715
3.01ProAsn: 3.01 ± 1.438
1.505ProPro: 1.505 ± 1.102
4.515ProGln: 4.515 ± 1.716
2.257ProArg: 2.257 ± 0.583
4.515ProSer: 4.515 ± 0.691
3.01ProThr: 3.01 ± 0.971
6.772ProVal: 6.772 ± 2.008
1.505ProTrp: 1.505 ± 1.076
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
6.02GlnAla: 6.02 ± 2.698
0.752GlnCys: 0.752 ± 0.719
2.257GlnAsp: 2.257 ± 1.614
3.01GlnGlu: 3.01 ± 1.567
2.257GlnPhe: 2.257 ± 1.757
3.01GlnGly: 3.01 ± 0.636
0.752GlnHis: 0.752 ± 0.719
3.762GlnIle: 3.762 ± 1.088
4.515GlnLys: 4.515 ± 1.507
3.762GlnLeu: 3.762 ± 0.834
1.505GlnMet: 1.505 ± 0.924
0.752GlnAsn: 0.752 ± 0.538
1.505GlnPro: 1.505 ± 0.679
8.277GlnGln: 8.277 ± 3.289
2.257GlnArg: 2.257 ± 0.583
6.02GlnSer: 6.02 ± 1.54
1.505GlnThr: 1.505 ± 0.715
3.762GlnVal: 3.762 ± 2.127
0.752GlnTrp: 0.752 ± 0.538
0.752GlnTyr: 0.752 ± 0.973
0.0GlnXaa: 0.0 ± 0.0
Arg
6.02ArgAla: 6.02 ± 0.969
0.752ArgCys: 0.752 ± 0.973
3.01ArgAsp: 3.01 ± 1.2
1.505ArgGlu: 1.505 ± 0.924
2.257ArgPhe: 2.257 ± 1.073
3.762ArgGly: 3.762 ± 0.834
0.752ArgHis: 0.752 ± 0.538
1.505ArgIle: 1.505 ± 1.438
2.257ArgLys: 2.257 ± 1.436
3.762ArgLeu: 3.762 ± 1.252
3.01ArgMet: 3.01 ± 1.699
2.257ArgAsn: 2.257 ± 1.138
3.01ArgPro: 3.01 ± 1.2
3.762ArgGln: 3.762 ± 1.381
3.01ArgArg: 3.01 ± 1.358
3.762ArgSer: 3.762 ± 1.933
1.505ArgThr: 1.505 ± 0.679
3.01ArgVal: 3.01 ± 1.737
0.752ArgTrp: 0.752 ± 0.538
4.515ArgTyr: 4.515 ± 2.037
0.0ArgXaa: 0.0 ± 0.0
Ser
12.039SerAla: 12.039 ± 3.442
0.752SerCys: 0.752 ± 0.719
5.267SerAsp: 5.267 ± 1.815
1.505SerGlu: 1.505 ± 1.347
3.01SerPhe: 3.01 ± 1.382
5.267SerGly: 5.267 ± 1.095
2.257SerHis: 2.257 ± 0.992
1.505SerIle: 1.505 ± 1.076
2.257SerLys: 2.257 ± 2.157
5.267SerLeu: 5.267 ± 2.854
0.752SerMet: 0.752 ± 1.842
3.01SerAsn: 3.01 ± 1.382
6.02SerPro: 6.02 ± 1.42
3.01SerGln: 3.01 ± 1.444
5.267SerArg: 5.267 ± 2.594
8.277SerSer: 8.277 ± 2.195
6.02SerThr: 6.02 ± 2.763
4.515SerVal: 4.515 ± 1.862
0.752SerTrp: 0.752 ± 0.719
0.752SerTyr: 0.752 ± 0.538
0.0SerXaa: 0.0 ± 0.0
Thr
4.515ThrAla: 4.515 ± 2.11
0.0ThrCys: 0.0 ± 0.0
1.505ThrAsp: 1.505 ± 1.314
2.257ThrGlu: 2.257 ± 0.963
2.257ThrPhe: 2.257 ± 1.614
6.02ThrGly: 6.02 ± 1.596
0.752ThrHis: 0.752 ± 0.719
3.762ThrIle: 3.762 ± 1.604
0.752ThrLys: 0.752 ± 0.719
6.02ThrLeu: 6.02 ± 2.888
0.752ThrMet: 0.752 ± 0.538
3.762ThrAsn: 3.762 ± 3.055
4.515ThrPro: 4.515 ± 0.691
1.505ThrGln: 1.505 ± 0.872
1.505ThrArg: 1.505 ± 1.076
6.02ThrSer: 6.02 ± 1.596
2.257ThrThr: 2.257 ± 0.959
1.505ThrVal: 1.505 ± 1.076
0.0ThrTrp: 0.0 ± 0.0
3.762ThrTyr: 3.762 ± 0.96
0.0ThrXaa: 0.0 ± 0.0
Val
6.772ValAla: 6.772 ± 3.002
0.0ValCys: 0.0 ± 0.0
5.267ValAsp: 5.267 ± 1.669
2.257ValGlu: 2.257 ± 0.947
4.515ValPhe: 4.515 ± 3.542
5.267ValGly: 5.267 ± 2.889
0.0ValHis: 0.0 ± 0.0
2.257ValIle: 2.257 ± 0.992
2.257ValLys: 2.257 ± 2.178
3.762ValLeu: 3.762 ± 1.471
2.257ValMet: 2.257 ± 1.047
2.257ValAsn: 2.257 ± 1.306
6.772ValPro: 6.772 ± 2.419
0.752ValGln: 0.752 ± 0.824
5.267ValArg: 5.267 ± 2.294
8.277ValSer: 8.277 ± 3.314
4.515ValThr: 4.515 ± 2.144
3.01ValVal: 3.01 ± 1.476
0.752ValTrp: 0.752 ± 0.538
0.752ValTyr: 0.752 ± 0.538
0.0ValXaa: 0.0 ± 0.0
Trp
1.505TrpAla: 1.505 ± 0.679
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
1.505TrpPhe: 1.505 ± 0.679
0.0TrpGly: 0.0 ± 0.0
0.752TrpHis: 0.752 ± 0.538
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.0TrpLeu: 0.0 ± 0.0
0.0TrpMet: 0.0 ± 0.0
0.752TrpAsn: 0.752 ± 0.538
1.505TrpPro: 1.505 ± 0.679
0.752TrpGln: 0.752 ± 0.719
0.0TrpArg: 0.0 ± 0.0
1.505TrpSer: 1.505 ± 1.076
0.0TrpThr: 0.0 ± 0.0
1.505TrpVal: 1.505 ± 0.715
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.505TyrAla: 1.505 ± 1.076
0.752TyrCys: 0.752 ± 0.538
1.505TyrAsp: 1.505 ± 0.679
0.752TyrGlu: 0.752 ± 0.973
3.01TyrPhe: 3.01 ± 1.444
1.505TyrGly: 1.505 ± 0.679
0.0TyrHis: 0.0 ± 0.0
2.257TyrIle: 2.257 ± 1.291
2.257TyrLys: 2.257 ± 1.436
4.515TyrLeu: 4.515 ± 1.762
0.752TyrMet: 0.752 ± 0.824
3.01TyrAsn: 3.01 ± 2.152
0.0TyrPro: 0.0 ± 0.0
5.267TyrGln: 5.267 ± 3.683
0.752TyrArg: 0.752 ± 0.538
3.762TyrSer: 3.762 ± 1.024
1.505TyrThr: 1.505 ± 0.679
1.505TyrVal: 1.505 ± 1.196
0.0TyrTrp: 0.0 ± 0.0
0.752TyrTyr: 0.752 ± 0.719
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1330 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski