Amino acid dipepetide frequency for Gokushovirinae Bog5712_52

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
20.506AlaAla: 20.506 ± 7.42
0.684AlaCys: 0.684 ± 0.618
4.101AlaAsp: 4.101 ± 1.626
3.418AlaGlu: 3.418 ± 1.535
2.051AlaPhe: 2.051 ± 1.045
12.303AlaGly: 12.303 ± 2.68
0.0AlaHis: 0.0 ± 0.0
5.468AlaIle: 5.468 ± 1.517
3.418AlaLys: 3.418 ± 1.885
4.101AlaLeu: 4.101 ± 1.394
4.101AlaMet: 4.101 ± 1.144
4.101AlaAsn: 4.101 ± 1.622
4.101AlaPro: 4.101 ± 2.812
8.886AlaGln: 8.886 ± 3.941
8.886AlaArg: 8.886 ± 1.008
8.886AlaSer: 8.886 ± 1.422
7.519AlaThr: 7.519 ± 2.464
12.303AlaVal: 12.303 ± 3.742
0.684AlaTrp: 0.684 ± 0.566
4.101AlaTyr: 4.101 ± 1.28
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
1.367CysAsp: 1.367 ± 0.684
0.684CysGlu: 0.684 ± 0.718
0.0CysPhe: 0.0 ± 0.0
2.051CysGly: 2.051 ± 1.813
0.0CysHis: 0.0 ± 0.0
0.684CysIle: 0.684 ± 0.618
0.684CysLys: 0.684 ± 0.618
1.367CysLeu: 1.367 ± 1.236
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.684CysArg: 0.684 ± 0.462
0.0CysSer: 0.0 ± 0.0
0.0CysThr: 0.0 ± 0.0
2.051CysVal: 2.051 ± 1.486
0.0CysTrp: 0.0 ± 0.0
1.367CysTyr: 1.367 ± 0.595
0.0CysXaa: 0.0 ± 0.0
Asp
6.152AspAla: 6.152 ± 1.133
0.0AspCys: 0.0 ± 0.0
0.684AspAsp: 0.684 ± 0.566
3.418AspGlu: 3.418 ± 1.983
3.418AspPhe: 3.418 ± 1.807
2.734AspGly: 2.734 ± 1.847
0.684AspHis: 0.684 ± 0.462
0.684AspIle: 0.684 ± 0.718
1.367AspLys: 1.367 ± 0.742
4.785AspLeu: 4.785 ± 1.924
0.684AspMet: 0.684 ± 0.566
4.101AspAsn: 4.101 ± 1.503
2.734AspPro: 2.734 ± 2.019
2.051AspGln: 2.051 ± 1.166
2.734AspArg: 2.734 ± 1.557
4.785AspSer: 4.785 ± 1.492
4.785AspThr: 4.785 ± 1.828
3.418AspVal: 3.418 ± 1.73
0.0AspTrp: 0.0 ± 0.0
3.418AspTyr: 3.418 ± 1.097
0.0AspXaa: 0.0 ± 0.0
Glu
3.418GluAla: 3.418 ± 1.717
0.684GluCys: 0.684 ± 0.718
2.734GluAsp: 2.734 ± 2.462
0.684GluGlu: 0.684 ± 0.618
1.367GluPhe: 1.367 ± 0.888
0.0GluGly: 0.0 ± 0.0
0.684GluHis: 0.684 ± 0.462
2.051GluIle: 2.051 ± 1.385
0.684GluLys: 0.684 ± 0.618
2.051GluLeu: 2.051 ± 1.099
1.367GluMet: 1.367 ± 0.95
2.734GluAsn: 2.734 ± 1.108
0.684GluPro: 0.684 ± 0.566
2.734GluGln: 2.734 ± 1.081
2.051GluArg: 2.051 ± 0.868
2.051GluSer: 2.051 ± 1.853
1.367GluThr: 1.367 ± 0.864
2.734GluVal: 2.734 ± 1.974
0.0GluTrp: 0.0 ± 0.0
2.734GluTyr: 2.734 ± 1.19
0.0GluXaa: 0.0 ± 0.0
Phe
2.051PheAla: 2.051 ± 1.045
0.684PheCys: 0.684 ± 0.913
4.785PheAsp: 4.785 ± 2.401
2.051PheGlu: 2.051 ± 1.266
5.468PhePhe: 5.468 ± 1.499
6.152PheGly: 6.152 ± 1.16
1.367PheHis: 1.367 ± 1.236
1.367PheIle: 1.367 ± 0.923
0.684PheLys: 0.684 ± 0.462
2.734PheLeu: 2.734 ± 1.138
2.734PheMet: 2.734 ± 1.287
2.051PheAsn: 2.051 ± 1.284
2.734PhePro: 2.734 ± 1.847
2.734PheGln: 2.734 ± 0.582
2.734PheArg: 2.734 ± 1.59
2.734PheSer: 2.734 ± 1.904
4.101PheThr: 4.101 ± 1.481
1.367PheVal: 1.367 ± 0.739
0.684PheTrp: 0.684 ± 1.08
0.684PheTyr: 0.684 ± 0.618
0.0PheXaa: 0.0 ± 0.0
Gly
10.936GlyAla: 10.936 ± 4.435
0.684GlyCys: 0.684 ± 0.618
4.785GlyAsp: 4.785 ± 0.85
3.418GlyGlu: 3.418 ± 0.977
2.051GlyPhe: 2.051 ± 1.036
14.354GlyGly: 14.354 ± 3.091
1.367GlyHis: 1.367 ± 0.595
2.734GlyIle: 2.734 ± 1.676
2.051GlyLys: 2.051 ± 1.036
11.62GlyLeu: 11.62 ± 2.79
1.367GlyMet: 1.367 ± 0.715
3.418GlyAsn: 3.418 ± 0.877
3.418GlyPro: 3.418 ± 1.787
4.101GlyGln: 4.101 ± 0.689
2.734GlyArg: 2.734 ± 1.904
4.785GlySer: 4.785 ± 0.85
8.886GlyThr: 8.886 ± 4.57
3.418GlyVal: 3.418 ± 1.801
1.367GlyTrp: 1.367 ± 1.093
2.734GlyTyr: 2.734 ± 1.847
0.0GlyXaa: 0.0 ± 0.0
His
3.418HisAla: 3.418 ± 1.634
0.0HisCys: 0.0 ± 0.0
0.684HisAsp: 0.684 ± 0.462
1.367HisGlu: 1.367 ± 1.236
2.051HisPhe: 2.051 ± 0.868
1.367HisGly: 1.367 ± 0.595
0.684HisHis: 0.684 ± 1.08
0.0HisIle: 0.0 ± 0.0
0.684HisLys: 0.684 ± 0.462
0.684HisLeu: 0.684 ± 0.462
0.684HisMet: 0.684 ± 0.618
0.684HisAsn: 0.684 ± 0.462
0.684HisPro: 0.684 ± 1.08
0.684HisGln: 0.684 ± 0.462
1.367HisArg: 1.367 ± 1.236
1.367HisSer: 1.367 ± 2.161
0.0HisThr: 0.0 ± 0.0
0.684HisVal: 0.684 ± 1.08
0.684HisTrp: 0.684 ± 0.462
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.418IleAla: 3.418 ± 0.877
0.0IleCys: 0.0 ± 0.0
4.101IleAsp: 4.101 ± 1.055
0.0IleGlu: 0.0 ± 0.0
0.684IlePhe: 0.684 ± 0.462
4.101IleGly: 4.101 ± 1.063
0.684IleHis: 0.684 ± 0.462
0.684IleIle: 0.684 ± 0.462
0.0IleLys: 0.0 ± 0.0
2.051IleLeu: 2.051 ± 0.707
0.0IleMet: 0.0 ± 0.0
3.418IleAsn: 3.418 ± 1.033
1.367IlePro: 1.367 ± 0.923
2.051IleGln: 2.051 ± 0.868
3.418IleArg: 3.418 ± 0.992
3.418IleSer: 3.418 ± 1.682
1.367IleThr: 1.367 ± 0.923
4.101IleVal: 4.101 ± 1.355
1.367IleTrp: 1.367 ± 0.923
2.734IleTyr: 2.734 ± 0.984
0.0IleXaa: 0.0 ± 0.0
Lys
6.152LysAla: 6.152 ± 2.953
0.0LysCys: 0.0 ± 0.0
0.0LysAsp: 0.0 ± 0.0
2.051LysGlu: 2.051 ± 1.122
0.684LysPhe: 0.684 ± 0.462
1.367LysGly: 1.367 ± 1.093
1.367LysHis: 1.367 ± 2.161
2.051LysIle: 2.051 ± 1.346
0.0LysLys: 0.0 ± 0.0
3.418LysLeu: 3.418 ± 1.108
0.684LysMet: 0.684 ± 1.034
1.367LysAsn: 1.367 ± 1.437
0.684LysPro: 0.684 ± 0.618
0.684LysGln: 0.684 ± 0.462
4.101LysArg: 4.101 ± 1.342
2.734LysSer: 2.734 ± 1.31
2.734LysThr: 2.734 ± 1.373
1.367LysVal: 1.367 ± 0.883
0.0LysTrp: 0.0 ± 0.0
0.0LysTyr: 0.0 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.835LeuAla: 6.835 ± 2.391
1.367LeuCys: 1.367 ± 1.093
1.367LeuAsp: 1.367 ± 1.236
4.101LeuGlu: 4.101 ± 1.547
5.468LeuPhe: 5.468 ± 1.15
7.519LeuGly: 7.519 ± 2.464
1.367LeuHis: 1.367 ± 0.595
2.734LeuIle: 2.734 ± 1.847
6.835LeuLys: 6.835 ± 3.761
5.468LeuLeu: 5.468 ± 2.959
1.367LeuMet: 1.367 ± 0.633
2.051LeuAsn: 2.051 ± 0.831
10.936LeuPro: 10.936 ± 2.166
4.101LeuGln: 4.101 ± 1.055
7.519LeuArg: 7.519 ± 1.543
2.734LeuSer: 2.734 ± 1.19
2.734LeuThr: 2.734 ± 1.043
4.101LeuVal: 4.101 ± 1.723
1.367LeuTrp: 1.367 ± 0.595
2.051LeuTyr: 2.051 ± 0.868
0.0LeuXaa: 0.0 ± 0.0
Met
3.418MetAla: 3.418 ± 1.535
0.0MetCys: 0.0 ± 0.0
2.051MetAsp: 2.051 ± 0.831
0.0MetGlu: 0.0 ± 0.0
1.367MetPhe: 1.367 ± 0.866
2.734MetGly: 2.734 ± 1.081
1.367MetHis: 1.367 ± 1.001
0.684MetIle: 0.684 ± 0.462
1.367MetLys: 1.367 ± 1.092
1.367MetLeu: 1.367 ± 0.541
0.684MetMet: 0.684 ± 0.566
0.684MetAsn: 0.684 ± 0.718
0.684MetPro: 0.684 ± 0.462
0.684MetGln: 0.684 ± 0.566
1.367MetArg: 1.367 ± 2.161
2.051MetSer: 2.051 ± 0.932
1.367MetThr: 1.367 ± 0.923
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.684MetTyr: 0.684 ± 0.566
0.0MetXaa: 0.0 ± 0.0
Asn
3.418AsnAla: 3.418 ± 2.297
0.684AsnCys: 0.684 ± 0.913
2.051AsnAsp: 2.051 ± 0.677
0.684AsnGlu: 0.684 ± 0.913
1.367AsnPhe: 1.367 ± 0.684
2.051AsnGly: 2.051 ± 1.284
0.0AsnHis: 0.0 ± 0.0
0.684AsnIle: 0.684 ± 0.618
0.684AsnLys: 0.684 ± 0.462
4.785AsnLeu: 4.785 ± 2.593
0.0AsnMet: 0.0 ± 0.0
0.0AsnAsn: 0.0 ± 0.0
3.418AsnPro: 3.418 ± 1.013
2.734AsnGln: 2.734 ± 0.772
1.367AsnArg: 1.367 ± 0.541
4.785AsnSer: 4.785 ± 1.577
4.101AsnThr: 4.101 ± 1.392
2.734AsnVal: 2.734 ± 1.59
0.684AsnTrp: 0.684 ± 0.566
2.051AsnTyr: 2.051 ± 0.677
0.0AsnXaa: 0.0 ± 0.0
Pro
9.569ProAla: 9.569 ± 3.06
1.367ProCys: 1.367 ± 1.236
3.418ProAsp: 3.418 ± 1.092
3.418ProGlu: 3.418 ± 0.945
1.367ProPhe: 1.367 ± 1.328
4.785ProGly: 4.785 ± 1.465
1.367ProHis: 1.367 ± 1.236
2.734ProIle: 2.734 ± 1.847
2.051ProLys: 2.051 ± 0.677
7.519ProLeu: 7.519 ± 2.812
2.734ProMet: 2.734 ± 1.449
2.051ProAsn: 2.051 ± 1.284
5.468ProPro: 5.468 ± 2.913
2.051ProGln: 2.051 ± 0.677
1.367ProArg: 1.367 ± 1.236
2.734ProSer: 2.734 ± 1.799
2.051ProThr: 2.051 ± 1.385
2.734ProVal: 2.734 ± 1.132
1.367ProTrp: 1.367 ± 0.541
1.367ProTyr: 1.367 ± 0.864
0.0ProXaa: 0.0 ± 0.0
Gln
6.152GlnAla: 6.152 ± 2.569
0.684GlnCys: 0.684 ± 0.618
3.418GlnAsp: 3.418 ± 1.618
2.734GlnGlu: 2.734 ± 0.923
2.734GlnPhe: 2.734 ± 1.19
4.785GlnGly: 4.785 ± 1.828
0.0GlnHis: 0.0 ± 0.0
3.418GlnIle: 3.418 ± 1.512
2.051GlnLys: 2.051 ± 1.385
2.734GlnLeu: 2.734 ± 1.018
2.734GlnMet: 2.734 ± 1.54
2.051GlnAsn: 2.051 ± 1.006
0.684GlnPro: 0.684 ± 0.718
3.418GlnGln: 3.418 ± 1.512
2.051GlnArg: 2.051 ± 0.677
3.418GlnSer: 3.418 ± 1.077
2.051GlnThr: 2.051 ± 0.831
2.734GlnVal: 2.734 ± 0.582
1.367GlnTrp: 1.367 ± 0.595
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
7.519ArgAla: 7.519 ± 2.007
2.051ArgCys: 2.051 ± 0.707
6.835ArgAsp: 6.835 ± 2.012
0.0ArgGlu: 0.0 ± 0.0
2.051ArgPhe: 2.051 ± 1.351
4.785ArgGly: 4.785 ± 0.969
1.367ArgHis: 1.367 ± 0.866
4.101ArgIle: 4.101 ± 1.735
3.418ArgLys: 3.418 ± 2.123
6.835ArgLeu: 6.835 ± 1.069
0.684ArgMet: 0.684 ± 0.462
1.367ArgAsn: 1.367 ± 1.131
3.418ArgPro: 3.418 ± 1.271
2.734ArgGln: 2.734 ± 1.138
4.101ArgArg: 4.101 ± 2.243
4.785ArgSer: 4.785 ± 1.792
0.684ArgThr: 0.684 ± 0.718
2.051ArgVal: 2.051 ± 1.036
1.367ArgTrp: 1.367 ± 0.923
4.785ArgTyr: 4.785 ± 1.61
0.0ArgXaa: 0.0 ± 0.0
Ser
11.62SerAla: 11.62 ± 1.211
0.684SerCys: 0.684 ± 0.913
4.785SerAsp: 4.785 ± 1.166
0.684SerGlu: 0.684 ± 0.566
4.101SerPhe: 4.101 ± 1.427
6.152SerGly: 6.152 ± 1.551
2.051SerHis: 2.051 ± 1.105
2.051SerIle: 2.051 ± 1.122
2.734SerLys: 2.734 ± 2.257
8.886SerLeu: 8.886 ± 1.855
0.0SerMet: 0.0 ± 0.73
0.684SerAsn: 0.684 ± 0.462
4.785SerPro: 4.785 ± 2.455
2.051SerGln: 2.051 ± 0.931
3.418SerArg: 3.418 ± 1.092
5.468SerSer: 5.468 ± 1.653
4.785SerThr: 4.785 ± 2.021
4.101SerVal: 4.101 ± 1.724
0.684SerTrp: 0.684 ± 0.618
1.367SerTyr: 1.367 ± 0.684
0.0SerXaa: 0.0 ± 0.0
Thr
6.835ThrAla: 6.835 ± 2.876
0.0ThrCys: 0.0 ± 0.0
2.734ThrAsp: 2.734 ± 1.043
2.734ThrGlu: 2.734 ± 1.081
6.152ThrPhe: 6.152 ± 2.252
5.468ThrGly: 5.468 ± 2.197
0.684ThrHis: 0.684 ± 0.462
2.734ThrIle: 2.734 ± 1.285
0.684ThrLys: 0.684 ± 0.566
4.101ThrLeu: 4.101 ± 1.622
1.367ThrMet: 1.367 ± 0.541
0.684ThrAsn: 0.684 ± 0.566
6.835ThrPro: 6.835 ± 2.338
1.367ThrGln: 1.367 ± 0.541
4.785ThrArg: 4.785 ± 1.145
4.785ThrSer: 4.785 ± 2.559
4.785ThrThr: 4.785 ± 2.05
2.051ThrVal: 2.051 ± 1.385
0.0ThrTrp: 0.0 ± 0.0
1.367ThrTyr: 1.367 ± 0.595
0.0ThrXaa: 0.0 ± 0.0
Val
4.785ValAla: 4.785 ± 2.251
0.0ValCys: 0.0 ± 0.0
0.684ValAsp: 0.684 ± 0.462
1.367ValGlu: 1.367 ± 1.001
2.734ValPhe: 2.734 ± 1.633
3.418ValGly: 3.418 ± 1.108
2.051ValHis: 2.051 ± 1.036
2.734ValIle: 2.734 ± 0.664
2.051ValLys: 2.051 ± 1.351
4.785ValLeu: 4.785 ± 1.577
0.684ValMet: 0.684 ± 0.913
3.418ValAsn: 3.418 ± 0.71
7.519ValPro: 7.519 ± 1.6
2.734ValGln: 2.734 ± 1.043
5.468ValArg: 5.468 ± 1.741
4.785ValSer: 4.785 ± 2.273
3.418ValThr: 3.418 ± 2.123
4.101ValVal: 4.101 ± 1.415
0.684ValTrp: 0.684 ± 0.462
1.367ValTyr: 1.367 ± 0.866
0.0ValXaa: 0.0 ± 0.0
Trp
2.051TrpAla: 2.051 ± 1.036
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
2.051TrpPhe: 2.051 ± 0.868
0.684TrpGly: 0.684 ± 0.566
0.684TrpHis: 0.684 ± 0.462
0.684TrpIle: 0.684 ± 0.462
0.684TrpLys: 0.684 ± 0.462
0.0TrpLeu: 0.0 ± 0.0
0.0TrpMet: 0.0 ± 0.0
0.684TrpAsn: 0.684 ± 0.462
1.367TrpPro: 1.367 ± 0.595
0.0TrpGln: 0.0 ± 0.0
2.734TrpArg: 2.734 ± 1.469
1.367TrpSer: 1.367 ± 0.923
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.367TyrAla: 1.367 ± 0.541
1.367TyrCys: 1.367 ± 0.595
2.051TyrAsp: 2.051 ± 0.707
0.0TyrGlu: 0.0 ± 0.0
2.734TyrPhe: 2.734 ± 1.847
3.418TyrGly: 3.418 ± 2.166
0.0TyrHis: 0.0 ± 0.0
0.684TyrIle: 0.684 ± 0.618
0.0TyrLys: 0.0 ± 0.0
2.734TyrLeu: 2.734 ± 0.772
0.684TyrMet: 0.684 ± 0.462
2.734TyrAsn: 2.734 ± 0.772
0.0TyrPro: 0.0 ± 0.0
3.418TyrGln: 3.418 ± 1.013
2.051TyrArg: 2.051 ± 1.122
3.418TyrSer: 3.418 ± 1.087
3.418TyrThr: 3.418 ± 1.077
2.051TyrVal: 2.051 ± 0.868
0.684TyrTrp: 0.684 ± 0.618
1.367TyrTyr: 1.367 ± 0.595
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1464 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski