Coriobacteriaceae bacterium

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; unclassified Coriobacteriaceae

Average proteome isoelectric point is 5.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1631 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V3RRH5|A0A4V3RRH5_9ACTN ArsR family transcriptional regulator OS=Coriobacteriaceae bacterium OX=2011094 GN=E5334_03000 PE=4 SV=1
MM1 pKa = 7.75CLRR4 pKa = 11.84GGLMISPEE12 pKa = 4.43LDD14 pKa = 3.16EE15 pKa = 5.64LSCNLIGEE23 pKa = 4.51ALDD26 pKa = 3.48VLAAGDD32 pKa = 3.95LLGVVASVLDD42 pKa = 4.02GQGNRR47 pKa = 11.84VTCAFEE53 pKa = 5.91DD54 pKa = 4.16DD55 pKa = 4.73GEE57 pKa = 4.5DD58 pKa = 3.44VCLEE62 pKa = 4.25AAHH65 pKa = 6.76KK66 pKa = 8.9WVKK69 pKa = 10.74DD70 pKa = 3.36LATGARR76 pKa = 11.84TEE78 pKa = 4.2PQLGAPMGYY87 pKa = 10.27AICYY91 pKa = 9.58SGAVDD96 pKa = 3.73TGDD99 pKa = 3.68GFADD103 pKa = 3.34ALMCEE108 pKa = 5.09FGDD111 pKa = 3.65KK112 pKa = 10.55DD113 pKa = 3.6PRR115 pKa = 11.84PDD117 pKa = 3.2YY118 pKa = 11.2SAFLLVQGTGEE129 pKa = 4.23SFSWSDD135 pKa = 3.36PAPAGEE141 pKa = 4.71LPSLLL146 pKa = 4.16

Molecular weight: 15.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V3RQY0|A0A4V3RQY0_9ACTN Antigen 84 OS=Coriobacteriaceae bacterium OX=2011094 GN=E5334_08425 PE=3 SV=1
MM1 pKa = 7.75ALPGLCLRR9 pKa = 11.84ASASAAMARR18 pKa = 11.84HH19 pKa = 5.75SSAGGGGGGFSARR32 pKa = 11.84AKK34 pKa = 10.54GPTGTMPHH42 pKa = 6.35EE43 pKa = 4.58FRR45 pKa = 11.84SKK47 pKa = 10.51GAGEE51 pKa = 3.96HH52 pKa = 6.62RR53 pKa = 11.84GDD55 pKa = 3.42NHH57 pKa = 6.99RR58 pKa = 11.84SLAAHH63 pKa = 6.95DD64 pKa = 4.11GSLRR68 pKa = 11.84GGVLPAWAGCGIWGSGISGSVRR90 pKa = 11.84PGSAGTGSHH99 pKa = 7.08RR100 pKa = 11.84SPSAGASCCVIADD113 pKa = 3.72PMRR116 pKa = 11.84LLRR119 pKa = 11.84VVGTAGVVPGRR130 pKa = 11.84KK131 pKa = 8.81AASGDD136 pKa = 3.8SDD138 pKa = 4.7RR139 pKa = 11.84LPADD143 pKa = 3.95LGAFRR148 pKa = 11.84SQCAGRR154 pKa = 11.84GGLGLEE160 pKa = 4.04SGGLFRR166 pKa = 11.84SLAYY170 pKa = 9.82RR171 pKa = 11.84RR172 pKa = 11.84RR173 pKa = 11.84TCLFQRR179 pKa = 11.84RR180 pKa = 11.84SPCPRR185 pKa = 11.84AGSVLGARR193 pKa = 11.84IAGFRR198 pKa = 11.84TLVLGCCNSFSGRR211 pKa = 11.84KK212 pKa = 8.0PCRR215 pKa = 11.84TLHH218 pKa = 6.27KK219 pKa = 10.38GLGGAMYY226 pKa = 9.48EE227 pKa = 4.19VHH229 pKa = 7.34DD230 pKa = 4.79LVLGFARR237 pKa = 11.84KK238 pKa = 9.24RR239 pKa = 11.84LLEE242 pKa = 4.32HH243 pKa = 7.21ASLTLEE249 pKa = 4.4PGRR252 pKa = 11.84VTGLIAPNGFGKK264 pKa = 7.58TTLLRR269 pKa = 11.84WLAGNRR275 pKa = 11.84SLGQASRR282 pKa = 11.84RR283 pKa = 11.84MLDD286 pKa = 3.1GHH288 pKa = 6.69KK289 pKa = 10.07EE290 pKa = 4.09PKK292 pKa = 9.04PQAIRR297 pKa = 11.84SKK299 pKa = 9.85VFYY302 pKa = 10.12MPGDD306 pKa = 3.76GSLLNPQLSGRR317 pKa = 11.84DD318 pKa = 3.73HH319 pKa = 6.82LQTAAQLWKK328 pKa = 10.48SSADD332 pKa = 2.96IAQVVTQCSMEE343 pKa = 4.37PYY345 pKa = 10.01IEE347 pKa = 3.92WAVRR351 pKa = 11.84RR352 pKa = 11.84LSQGMAQQLALACAYY367 pKa = 9.03VAQPKK372 pKa = 10.19YY373 pKa = 10.96LLLDD377 pKa = 3.75EE378 pKa = 5.26PMNALDD384 pKa = 3.86PTHH387 pKa = 7.01AEE389 pKa = 4.36SNGHH393 pKa = 5.57YY394 pKa = 10.24LRR396 pKa = 11.84ALARR400 pKa = 11.84RR401 pKa = 11.84GSAVLFSSHH410 pKa = 7.06ILDD413 pKa = 3.93NVTAVCDD420 pKa = 3.69SVLTMEE426 pKa = 4.7GRR428 pKa = 11.84RR429 pKa = 11.84LTEE432 pKa = 3.84HH433 pKa = 6.56EE434 pKa = 4.18NTRR437 pKa = 11.84SRR439 pKa = 11.84GFAAEE444 pKa = 4.73LYY446 pKa = 9.55RR447 pKa = 11.84RR448 pKa = 11.84TYY450 pKa = 8.91QTVNDD455 pKa = 4.39APGSAASRR463 pKa = 11.84QPPRR467 pKa = 3.82

Molecular weight: 49.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1631

0

1631

565989

29

2350

347.0

37.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.497 ± 0.081

1.521 ± 0.029

6.197 ± 0.059

6.266 ± 0.061

3.389 ± 0.037

8.019 ± 0.057

1.963 ± 0.027

4.883 ± 0.046

3.773 ± 0.043

9.542 ± 0.072

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.459 ± 0.027

2.915 ± 0.047

4.889 ± 0.051

3.789 ± 0.038

5.412 ± 0.062

6.186 ± 0.046

5.504 ± 0.057

7.85 ± 0.053

1.159 ± 0.025

2.79 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski