Amino acid dipepetide frequency for Corchorus capsularis (Jute)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	6.642AlaAla: 6.642 ± 0.038	1.206AlaCys: 1.206 ± 0.012	3.214AlaAsp: 3.214 ± 0.02	4.328AlaGlu: 4.328 ± 0.027	2.778AlaPhe: 2.778 ± 0.017	4.04AlaGly: 4.04 ± 0.025	1.276AlaHis: 1.276 ± 0.01	3.905AlaIle: 3.905 ± 0.024	4.152AlaLys: 4.152 ± 0.023	6.612AlaLeu: 6.612 ± 0.032	1.896AlaMet: 1.896 ± 0.013	2.734AlaAsn: 2.734 ± 0.015	2.912AlaPro: 2.912 ± 0.023	2.181AlaGln: 2.181 ± 0.017	3.41AlaArg: 3.41 ± 0.018	5.968AlaSer: 5.968 ± 0.029	3.697AlaThr: 3.697 ± 0.022	4.717AlaVal: 4.717 ± 0.025	0.789AlaTrp: 0.789 ± 0.01	1.829AlaTyr: 1.829 ± 0.014	0.0AlaXaa: 0.0 ± 0.0
Cys	0.943CysAla: 0.943 ± 0.01	0.502CysCys: 0.502 ± 0.008	0.847CysAsp: 0.847 ± 0.01	0.879CysGlu: 0.879 ± 0.009	0.881CysPhe: 0.881 ± 0.01	1.317CysGly: 1.317 ± 0.014	0.467CysHis: 0.467 ± 0.007	0.975CysIle: 0.975 ± 0.01	1.154CysLys: 1.154 ± 0.011	1.827CysLeu: 1.827 ± 0.016	0.429CysMet: 0.429 ± 0.006	0.893CysAsn: 0.893 ± 0.011	0.952CysPro: 0.952 ± 0.012	0.619CysGln: 0.619 ± 0.008	1.011CysArg: 1.011 ± 0.011	1.749CysSer: 1.749 ± 0.014	0.822CysThr: 0.822 ± 0.01	1.005CysVal: 1.005 ± 0.01	0.245CysTrp: 0.245 ± 0.005	0.554CysTyr: 0.554 ± 0.008	0.0CysXaa: 0.0 ± 0.0
Asp	3.438AspAla: 3.438 ± 0.02	0.982AspCys: 0.982 ± 0.011	3.806AspAsp: 3.806 ± 0.028	4.155AspGlu: 4.155 ± 0.025	2.405AspPhe: 2.405 ± 0.016	3.839AspGly: 3.839 ± 0.023	1.296AspHis: 1.296 ± 0.012	3.029AspIle: 3.029 ± 0.018	2.878AspLys: 2.878 ± 0.017	5.014AspLeu: 5.014 ± 0.026	1.34AspMet: 1.34 ± 0.013	2.185AspAsn: 2.185 ± 0.015	2.628AspPro: 2.628 ± 0.018	1.88AspGln: 1.88 ± 0.013	2.424AspArg: 2.424 ± 0.018	4.343AspSer: 4.343 ± 0.024	2.072AspThr: 2.072 ± 0.014	3.533AspVal: 3.533 ± 0.02	0.722AspTrp: 0.722 ± 0.008	1.604AspTyr: 1.604 ± 0.015	0.0AspXaa: 0.0 ± 0.0
Glu	4.921GluAla: 4.921 ± 0.03	0.906GluCys: 0.906 ± 0.011	4.056GluAsp: 4.056 ± 0.023	6.597GluGlu: 6.597 ± 0.044	2.473GluPhe: 2.473 ± 0.016	3.707GluGly: 3.707 ± 0.023	1.248GluHis: 1.248 ± 0.012	3.888GluIle: 3.888 ± 0.024	4.999GluLys: 4.999 ± 0.028	6.058GluLeu: 6.058 ± 0.037	1.82GluMet: 1.82 ± 0.015	3.243GluAsn: 3.243 ± 0.018	2.203GluPro: 2.203 ± 0.018	2.288GluGln: 2.288 ± 0.017	3.389GluArg: 3.389 ± 0.024	4.668GluSer: 4.668 ± 0.025	3.199GluThr: 3.199 ± 0.022	4.201GluVal: 4.201 ± 0.023	0.765GluTrp: 0.765 ± 0.009	1.638GluTyr: 1.638 ± 0.013	0.0GluXaa: 0.0 ± 0.0
Phe	2.524PheAla: 2.524 ± 0.017	0.896PheCys: 0.896 ± 0.01	2.453PheAsp: 2.453 ± 0.016	2.407PheGlu: 2.407 ± 0.017	1.9PhePhe: 1.9 ± 0.015	2.966PheGly: 2.966 ± 0.019	1.113PheHis: 1.113 ± 0.009	2.103PheIle: 2.103 ± 0.016	2.26PheLys: 2.26 ± 0.016	4.253PheLeu: 4.253 ± 0.027	0.984PheMet: 0.984 ± 0.01	1.856PheAsn: 1.856 ± 0.014	2.121PhePro: 2.121 ± 0.016	1.623PheGln: 1.623 ± 0.013	2.062PheArg: 2.062 ± 0.016	3.99PheSer: 3.99 ± 0.022	1.957PheThr: 1.957 ± 0.017	2.663PheVal: 2.663 ± 0.019	0.576PheTrp: 0.576 ± 0.008	1.25PheTyr: 1.25 ± 0.012	0.0PheXaa: 0.0 ± 0.0
Gly	3.853GlyAla: 3.853 ± 0.025	1.273GlyCys: 1.273 ± 0.015	3.388GlyAsp: 3.388 ± 0.021	3.665GlyGlu: 3.665 ± 0.02	3.17GlyPhe: 3.17 ± 0.02	5.243GlyGly: 5.243 ± 0.05	1.5GlyHis: 1.5 ± 0.013	3.631GlyIle: 3.631 ± 0.022	4.2GlyLys: 4.2 ± 0.023	5.794GlyLeu: 5.794 ± 0.03	1.494GlyMet: 1.494 ± 0.014	3.266GlyAsn: 3.266 ± 0.024	2.435GlyPro: 2.435 ± 0.018	2.084GlyGln: 2.084 ± 0.016	3.523GlyArg: 3.523 ± 0.023	5.877GlySer: 5.877 ± 0.028	3.112GlyThr: 3.112 ± 0.019	4.062GlyVal: 4.062 ± 0.024	0.878GlyTrp: 0.878 ± 0.011	2.035GlyTyr: 2.035 ± 0.016	0.0GlyXaa: 0.0 ± 0.0
His	1.361HisAla: 1.361 ± 0.013	0.496HisCys: 0.496 ± 0.008	1.173HisAsp: 1.173 ± 0.013	1.301HisGlu: 1.301 ± 0.011	1.054HisPhe: 1.054 ± 0.011	1.694HisGly: 1.694 ± 0.014	0.946HisHis: 0.946 ± 0.013	1.183HisIle: 1.183 ± 0.011	1.152HisLys: 1.152 ± 0.011	2.342HisLeu: 2.342 ± 0.017	0.53HisMet: 0.53 ± 0.007	0.945HisAsn: 0.945 ± 0.01	1.347HisPro: 1.347 ± 0.014	1.046HisGln: 1.046 ± 0.01	1.292HisArg: 1.292 ± 0.011	1.862HisSer: 1.862 ± 0.015	0.893HisThr: 0.893 ± 0.01	1.523HisVal: 1.523 ± 0.014	0.291HisTrp: 0.291 ± 0.006	0.699HisTyr: 0.699 ± 0.009	0.0HisXaa: 0.0 ± 0.0
Ile	3.644IleAla: 3.644 ± 0.018	1.074IleCys: 1.074 ± 0.011	2.986IleAsp: 2.986 ± 0.018	3.312IleGlu: 3.312 ± 0.018	2.282IlePhe: 2.282 ± 0.016	3.371IleGly: 3.371 ± 0.02	1.258IleHis: 1.258 ± 0.011	2.804IleIle: 2.804 ± 0.019	3.08IleLys: 3.08 ± 0.019	5.107IleLeu: 5.107 ± 0.026	1.166IleMet: 1.166 ± 0.011	2.31IleAsn: 2.31 ± 0.018	3.008IlePro: 3.008 ± 0.022	2.001IleGln: 2.001 ± 0.013	2.703IleArg: 2.703 ± 0.016	4.82IleSer: 4.82 ± 0.022	2.537IleThr: 2.537 ± 0.017	3.467IleVal: 3.467 ± 0.022	0.725IleTrp: 0.725 ± 0.009	1.503IleTyr: 1.503 ± 0.014	0.0IleXaa: 0.0 ± 0.0
Lys	4.353LysAla: 4.353 ± 0.025	0.973LysCys: 0.973 ± 0.01	3.375LysAsp: 3.375 ± 0.018	4.996LysGlu: 4.996 ± 0.034	2.34LysPhe: 2.34 ± 0.015	3.782LysGly: 3.782 ± 0.023	1.329LysHis: 1.329 ± 0.012	3.328LysIle: 3.328 ± 0.02	5.053LysLys: 5.053 ± 0.033	6.226LysLeu: 6.226 ± 0.029	1.585LysMet: 1.585 ± 0.014	2.747LysAsn: 2.747 ± 0.017	3.007LysPro: 3.007 ± 0.021	2.465LysGln: 2.465 ± 0.017	3.675LysArg: 3.675 ± 0.02	4.834LysSer: 4.834 ± 0.029	3.032LysThr: 3.032 ± 0.018	4.0LysVal: 4.0 ± 0.021	0.841LysTrp: 0.841 ± 0.011	1.683LysTyr: 1.683 ± 0.013	0.0LysXaa: 0.0 ± 0.0
Leu	6.512LeuAla: 6.512 ± 0.029	1.759LeuCys: 1.759 ± 0.015	5.051LeuAsp: 5.051 ± 0.025	6.443LeuGlu: 6.443 ± 0.033	3.732LeuPhe: 3.732 ± 0.021	5.747LeuGly: 5.747 ± 0.029	2.46LeuHis: 2.46 ± 0.018	4.631LeuIle: 4.631 ± 0.025	6.405LeuLys: 6.405 ± 0.03	9.59LeuLeu: 9.59 ± 0.045	2.123LeuMet: 2.123 ± 0.016	4.034LeuAsn: 4.034 ± 0.022	5.224LeuPro: 5.224 ± 0.027	4.279LeuGln: 4.279 ± 0.026	5.305LeuArg: 5.305 ± 0.025	8.385LeuSer: 8.385 ± 0.037	4.383LeuThr: 4.383 ± 0.024	6.165LeuVal: 6.165 ± 0.032	1.163LeuTrp: 1.163 ± 0.014	2.431LeuTyr: 2.431 ± 0.018	0.0LeuXaa: 0.0 ± 0.0
Met	2.433MetAla: 2.433 ± 0.018	0.298MetCys: 0.298 ± 0.005	1.476MetAsp: 1.476 ± 0.012	2.165MetGlu: 2.165 ± 0.017	0.797MetPhe: 0.797 ± 0.008	1.656MetGly: 1.656 ± 0.013	0.505MetHis: 0.505 ± 0.007	1.189MetIle: 1.189 ± 0.011	1.668MetLys: 1.668 ± 0.016	2.096MetLeu: 2.096 ± 0.017	0.678MetMet: 0.678 ± 0.008	1.048MetAsn: 1.048 ± 0.011	1.052MetPro: 1.052 ± 0.013	0.91MetGln: 0.91 ± 0.011	1.149MetArg: 1.149 ± 0.012	1.721MetSer: 1.721 ± 0.014	1.028MetThr: 1.028 ± 0.01	1.689MetVal: 1.689 ± 0.015	0.253MetTrp: 0.253 ± 0.005	0.535MetTyr: 0.535 ± 0.008	0.0MetXaa: 0.0 ± 0.0
Asn	2.742AsnAla: 2.742 ± 0.018	0.89AsnCys: 0.89 ± 0.012	2.197AsnAsp: 2.197 ± 0.016	2.6AsnGlu: 2.6 ± 0.017	1.986AsnPhe: 1.986 ± 0.016	3.431AsnGly: 3.431 ± 0.022	1.134AsnHis: 1.134 ± 0.011	2.481AsnIle: 2.481 ± 0.017	2.597AsnLys: 2.597 ± 0.018	4.71AsnLeu: 4.71 ± 0.036	1.148AsnMet: 1.148 ± 0.011	2.543AsnAsn: 2.543 ± 0.025	2.519AsnPro: 2.519 ± 0.018	1.833AsnGln: 1.833 ± 0.015	2.09AsnArg: 2.09 ± 0.013	4.066AsnSer: 4.066 ± 0.023	1.896AsnThr: 1.896 ± 0.014	2.824AsnVal: 2.824 ± 0.019	0.587AsnTrp: 0.587 ± 0.009	1.33AsnTyr: 1.33 ± 0.012	0.0AsnXaa: 0.0 ± 0.0
Pro	3.075ProAla: 3.075 ± 0.023	0.784ProCys: 0.784 ± 0.011	2.524ProAsp: 2.524 ± 0.016	3.188ProGlu: 3.188 ± 0.022	2.045ProPhe: 2.045 ± 0.015	2.686ProGly: 2.686 ± 0.017	1.077ProHis: 1.077 ± 0.013	2.453ProIle: 2.453 ± 0.015	2.967ProLys: 2.967 ± 0.024	4.379ProLeu: 4.379 ± 0.024	1.03ProMet: 1.03 ± 0.01	2.395ProAsn: 2.395 ± 0.018	4.104ProPro: 4.104 ± 0.056	1.87ProGln: 1.87 ± 0.017	2.413ProArg: 2.413 ± 0.018	5.165ProSer: 5.165 ± 0.03	2.744ProThr: 2.744 ± 0.022	3.092ProVal: 3.092 ± 0.02	0.622ProTrp: 0.622 ± 0.008	1.367ProTyr: 1.367 ± 0.016	0.0ProXaa: 0.0 ± 0.0
Gln	2.529GlnAla: 2.529 ± 0.019	0.575GlnCys: 0.575 ± 0.008	1.676GlnAsp: 1.676 ± 0.013	2.487GlnGlu: 2.487 ± 0.017	1.441GlnPhe: 1.441 ± 0.013	2.209GlnGly: 2.209 ± 0.017	0.907GlnHis: 0.907 ± 0.01	2.074GlnIle: 2.074 ± 0.015	2.474GlnLys: 2.474 ± 0.017	3.664GlnLeu: 3.664 ± 0.026	0.993GlnMet: 0.993 ± 0.011	1.876GlnAsn: 1.876 ± 0.014	1.865GlnPro: 1.865 ± 0.016	2.249GlnGln: 2.249 ± 0.034	2.167GlnArg: 2.167 ± 0.016	2.949GlnSer: 2.949 ± 0.02	1.782GlnThr: 1.782 ± 0.013	2.417GlnVal: 2.417 ± 0.018	0.473GlnTrp: 0.473 ± 0.007	0.932GlnTyr: 0.932 ± 0.01	0.0GlnXaa: 0.0 ± 0.0
Arg	3.309ArgAla: 3.309 ± 0.022	0.949ArgCys: 0.949 ± 0.01	2.614ArgAsp: 2.614 ± 0.017	3.332ArgGlu: 3.332 ± 0.025	2.255ArgPhe: 2.255 ± 0.015	3.116ArgGly: 3.116 ± 0.023	1.251ArgHis: 1.251 ± 0.012	2.855ArgIle: 2.855 ± 0.017	3.905ArgLys: 3.905 ± 0.022	5.014ArgLeu: 5.014 ± 0.024	1.314ArgMet: 1.314 ± 0.011	2.495ArgAsn: 2.495 ± 0.018	2.383ArgPro: 2.383 ± 0.016	1.971ArgGln: 1.971 ± 0.015	3.904ArgArg: 3.904 ± 0.024	4.217ArgSer: 4.217 ± 0.026	2.349ArgThr: 2.349 ± 0.015	3.305ArgVal: 3.305 ± 0.018	0.733ArgTrp: 0.733 ± 0.01	1.449ArgTyr: 1.449 ± 0.011	0.0ArgXaa: 0.0 ± 0.0
Ser	5.308SerAla: 5.308 ± 0.029	1.667SerCys: 1.667 ± 0.014	4.459SerAsp: 4.459 ± 0.024	4.775SerGlu: 4.775 ± 0.029	3.928SerPhe: 3.928 ± 0.021	5.71SerGly: 5.71 ± 0.03	1.944SerHis: 1.944 ± 0.015	4.512SerIle: 4.512 ± 0.025	5.295SerLys: 5.295 ± 0.028	8.571SerLeu: 8.571 ± 0.036	2.092SerMet: 2.092 ± 0.015	4.185SerAsn: 4.185 ± 0.022	4.585SerPro: 4.585 ± 0.036	3.093SerGln: 3.093 ± 0.022	4.427SerArg: 4.427 ± 0.026	10.961SerSer: 10.961 ± 0.057	4.667SerThr: 4.667 ± 0.026	5.042SerVal: 5.042 ± 0.026	1.138SerTrp: 1.138 ± 0.012	2.212SerTyr: 2.212 ± 0.015	0.0SerXaa: 0.0 ± 0.0
Thr	3.417ThrAla: 3.417 ± 0.024	0.905ThrCys: 0.905 ± 0.011	2.248ThrAsp: 2.248 ± 0.016	2.77ThrGlu: 2.77 ± 0.019	2.006ThrPhe: 2.006 ± 0.014	3.132ThrGly: 3.132 ± 0.019	0.985ThrHis: 0.985 ± 0.011	2.676ThrIle: 2.676 ± 0.017	2.777ThrLys: 2.777 ± 0.02	4.591ThrLeu: 4.591 ± 0.021	1.155ThrMet: 1.155 ± 0.011	2.114ThrAsn: 2.114 ± 0.016	2.664ThrPro: 2.664 ± 0.021	1.596ThrGln: 1.596 ± 0.015	2.378ThrArg: 2.378 ± 0.018	4.516ThrSer: 4.516 ± 0.023	2.882ThrThr: 2.882 ± 0.022	3.241ThrVal: 3.241 ± 0.019	0.651ThrTrp: 0.651 ± 0.007	1.35ThrTyr: 1.35 ± 0.01	0.0ThrXaa: 0.0 ± 0.0
Val	4.824ValAla: 4.824 ± 0.024	1.108ValCys: 1.108 ± 0.01	3.759ValAsp: 3.759 ± 0.02	4.466ValGlu: 4.466 ± 0.027	2.665ValPhe: 2.665 ± 0.018	3.997ValGly: 3.997 ± 0.024	1.422ValHis: 1.422 ± 0.014	3.337ValIle: 3.337 ± 0.02	4.012ValLys: 4.012 ± 0.02	6.071ValLeu: 6.071 ± 0.031	1.516ValMet: 1.516 ± 0.013	2.706ValAsn: 2.706 ± 0.017	3.204ValPro: 3.204 ± 0.019	2.306ValGln: 2.306 ± 0.017	3.062ValArg: 3.062 ± 0.018	5.31ValSer: 5.31 ± 0.029	3.138ValThr: 3.138 ± 0.02	4.679ValVal: 4.679 ± 0.027	0.773ValTrp: 0.773 ± 0.009	1.842ValTyr: 1.842 ± 0.016	0.0ValXaa: 0.0 ± 0.0
Trp	0.74TrpAla: 0.74 ± 0.009	0.22TrpCys: 0.22 ± 0.005	0.725TrpAsp: 0.725 ± 0.009	0.807TrpGlu: 0.807 ± 0.01	0.537TrpPhe: 0.537 ± 0.007	0.74TrpGly: 0.74 ± 0.01	0.308TrpHis: 0.308 ± 0.006	0.701TrpIle: 0.701 ± 0.009	0.999TrpLys: 0.999 ± 0.01	1.223TrpLeu: 1.223 ± 0.011	0.34TrpMet: 0.34 ± 0.006	0.707TrpAsn: 0.707 ± 0.01	0.51TrpPro: 0.51 ± 0.007	0.462TrpGln: 0.462 ± 0.008	0.87TrpArg: 0.87 ± 0.011	0.942TrpSer: 0.942 ± 0.01	0.615TrpThr: 0.615 ± 0.009	0.845TrpVal: 0.845 ± 0.01	0.232TrpTrp: 0.232 ± 0.005	0.335TrpTyr: 0.335 ± 0.006	0.0TrpXaa: 0.0 ± 0.0
Tyr	1.719TyrAla: 1.719 ± 0.014	0.608TyrCys: 0.608 ± 0.008	1.544TyrAsp: 1.544 ± 0.013	1.593TyrGlu: 1.593 ± 0.013	1.281TyrPhe: 1.281 ± 0.012	2.103TyrGly: 2.103 ± 0.019	0.702TyrHis: 0.702 ± 0.009	1.403TyrIle: 1.403 ± 0.012	1.597TyrLys: 1.597 ± 0.016	2.681TyrLeu: 2.681 ± 0.02	0.714TyrMet: 0.714 ± 0.008	1.32TyrAsn: 1.32 ± 0.013	1.259TyrPro: 1.259 ± 0.013	0.982TyrGln: 0.982 ± 0.012	1.464TyrArg: 1.464 ± 0.012	2.227TyrSer: 2.227 ± 0.016	1.248TyrThr: 1.248 ± 0.011	1.731TyrVal: 1.731 ± 0.015	0.4TyrTrp: 0.4 ± 0.008	0.99TyrTyr: 0.99 ± 0.011	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 29098 proteins (10081701 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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