Piper yellow mottle virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus

Average proteome isoelectric point is 6.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|T2BAL2|T2BAL2_9VIRU Reverse transcriptase OS=Piper yellow mottle virus OX=262957 PE=4 SV=1
MM1 pKa = 7.55ASSGTGNYY9 pKa = 9.85HH10 pKa = 5.98YY11 pKa = 10.6GSSSRR16 pKa = 11.84SGATEE21 pKa = 3.38PNARR25 pKa = 11.84FDD27 pKa = 3.74QSPEE31 pKa = 3.78AGLTPSQPMAKK42 pKa = 9.49LDD44 pKa = 3.6QQYY47 pKa = 10.91QDD49 pKa = 2.94ALEE52 pKa = 4.33RR53 pKa = 11.84FTRR56 pKa = 11.84TDD58 pKa = 3.39CTSTRR63 pKa = 11.84EE64 pKa = 4.06WWNHH68 pKa = 3.53LCQLKK73 pKa = 10.14EE74 pKa = 4.24LEE76 pKa = 4.4GKK78 pKa = 8.05ATKK81 pKa = 9.76EE82 pKa = 3.74AEE84 pKa = 4.0EE85 pKa = 4.07AMEE88 pKa = 4.1VLVNLHH94 pKa = 5.17QLKK97 pKa = 10.06HH98 pKa = 6.0AEE100 pKa = 4.24CARR103 pKa = 11.84LSRR106 pKa = 11.84KK107 pKa = 8.1NQQLKK112 pKa = 10.98DD113 pKa = 4.0SVPDD117 pKa = 3.54YY118 pKa = 11.25YY119 pKa = 10.99QDD121 pKa = 3.42QLEE124 pKa = 5.17AIMMDD129 pKa = 3.96DD130 pKa = 3.16VALRR134 pKa = 11.84QIAINLVDD142 pKa = 4.03VIKK145 pKa = 10.61SVRR148 pKa = 11.84AKK150 pKa = 10.47EE151 pKa = 3.84LL152 pKa = 3.34

Molecular weight: 17.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|T2BB23|T2BB23_9VIRU ORF2 OS=Piper yellow mottle virus OX=262957 PE=4 SV=1
MM1 pKa = 7.75SYY3 pKa = 10.81INTISTSAYY12 pKa = 9.76KK13 pKa = 10.3EE14 pKa = 3.8ALQATEE20 pKa = 3.86QLEE23 pKa = 4.4EE24 pKa = 4.02PALGFVKK31 pKa = 10.35PRR33 pKa = 11.84DD34 pKa = 3.71HH35 pKa = 6.56NRR37 pKa = 11.84EE38 pKa = 4.24GIQKK42 pKa = 10.2SVTAVTKK49 pKa = 10.64QNNTLIQLVVDD60 pKa = 3.65LHH62 pKa = 6.27EE63 pKa = 5.48KK64 pKa = 10.59INTLEE69 pKa = 4.01EE70 pKa = 4.61KK71 pKa = 10.22IEE73 pKa = 4.16KK74 pKa = 9.5LRR76 pKa = 11.84KK77 pKa = 9.34EE78 pKa = 4.49PPQSTGISADD88 pKa = 3.35LVTKK92 pKa = 10.8LEE94 pKa = 3.99NLTLQDD100 pKa = 3.12QGKK103 pKa = 9.37KK104 pKa = 9.56PKK106 pKa = 9.74EE107 pKa = 4.03SRR109 pKa = 11.84GKK111 pKa = 10.25RR112 pKa = 11.84LVFKK116 pKa = 10.84DD117 pKa = 3.2PLEE120 pKa = 4.43IIKK123 pKa = 10.56AEE125 pKa = 3.95KK126 pKa = 10.18RR127 pKa = 11.84KK128 pKa = 10.07LDD130 pKa = 3.65GPGPSKK136 pKa = 11.1NSGGGPNHH144 pKa = 7.06SIQAKK149 pKa = 8.17PEE151 pKa = 3.76KK152 pKa = 10.44DD153 pKa = 3.07AA154 pKa = 5.47

Molecular weight: 17.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

2366

135

1925

591.5

67.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.959 ± 0.826

1.817 ± 0.348

5.368 ± 0.691

8.538 ± 1.145

2.874 ± 0.603

5.579 ± 1.289

2.282 ± 0.189

6.974 ± 0.976

7.946 ± 1.364

8.58 ± 1.89

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.409 ± 0.403

4.691 ± 0.277

4.522 ± 0.543

5.41 ± 0.536

5.114 ± 0.257

6.298 ± 0.644

5.621 ± 0.143

5.875 ± 0.422

1.268 ± 0.292

2.874 ± 0.608
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski