Lactobacillus coryniformis subsp. coryniformis CECT 5711

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Loigolactobacillus; Loigolactobacillus coryniformis; Loigolactobacillus coryniformis subsp. coryniformis

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2023 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J3JBU1|J3JBU1_9LACO Conjugative transposon protein OS=Lactobacillus coryniformis subsp. coryniformis CECT 5711 OX=1185325 GN=A11Y_37051 PE=4 SV=1
MM1 pKa = 6.35EE2 pKa = 4.44TVRR5 pKa = 11.84VFIVNLGYY13 pKa = 10.9YY14 pKa = 9.57NQGKK18 pKa = 7.41PTGKK22 pKa = 9.33WFTPPLYY29 pKa = 9.43PDD31 pKa = 5.54AIAEE35 pKa = 4.01QLEE38 pKa = 4.38LKK40 pKa = 10.48NDD42 pKa = 3.5SEE44 pKa = 4.9EE45 pKa = 4.28YY46 pKa = 10.44AIHH49 pKa = 7.62DD50 pKa = 3.83YY51 pKa = 9.66EE52 pKa = 5.82APFEE56 pKa = 4.18IDD58 pKa = 3.38RR59 pKa = 11.84FDD61 pKa = 5.72SIDD64 pKa = 3.83EE65 pKa = 4.16INRR68 pKa = 11.84KK69 pKa = 8.59YY70 pKa = 10.79AALEE74 pKa = 3.7RR75 pKa = 11.84LEE77 pKa = 5.22EE78 pKa = 4.16YY79 pKa = 11.01DD80 pKa = 4.14FGADD84 pKa = 3.17VSALIGEE91 pKa = 4.7WFRR94 pKa = 11.84DD95 pKa = 3.48IEE97 pKa = 4.19EE98 pKa = 4.21LAEE101 pKa = 4.05NAEE104 pKa = 4.85DD105 pKa = 3.61IIIYY109 pKa = 10.31KK110 pKa = 10.11GVSDD114 pKa = 4.09MAEE117 pKa = 3.94LAQDD121 pKa = 3.61AVEE124 pKa = 4.42SGAVFGDD131 pKa = 4.38LPDD134 pKa = 3.48QVIAYY139 pKa = 10.24LDD141 pKa = 4.06FEE143 pKa = 4.5ALGRR147 pKa = 11.84DD148 pKa = 3.59MEE150 pKa = 4.46IEE152 pKa = 4.03GNYY155 pKa = 10.35LVTNSAIYY163 pKa = 10.05EE164 pKa = 4.22YY165 pKa = 11.49ANN167 pKa = 3.22

Molecular weight: 19.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J3JBT8|J3JBT8_9LACO Uncharacterized protein OS=Lactobacillus coryniformis subsp. coryniformis CECT 5711 OX=1185325 GN=A11Y_119389 PE=4 SV=1
MM1 pKa = 7.33IQTEE5 pKa = 4.2LATFGFGLINNRR17 pKa = 11.84KK18 pKa = 8.99PILFSRR24 pKa = 11.84KK25 pKa = 8.78YY26 pKa = 7.83STSRR30 pKa = 11.84YY31 pKa = 8.92FLLISVAKK39 pKa = 9.91MNDD42 pKa = 3.03YY43 pKa = 11.53DD44 pKa = 4.06RR45 pKa = 11.84FRR47 pKa = 11.84GDD49 pKa = 4.19FRR51 pKa = 11.84EE52 pKa = 4.32LSCKK56 pKa = 9.87LRR58 pKa = 11.84NCISSTQLASITARR72 pKa = 11.84NIVFCKK78 pKa = 9.91HH79 pKa = 4.82RR80 pKa = 11.84RR81 pKa = 11.84ASISIII87 pKa = 3.55

Molecular weight: 10.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2023

0

2023

662235

66

1608

327.4

36.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.583 ± 0.062

0.504 ± 0.013

5.398 ± 0.052

5.037 ± 0.046

4.154 ± 0.042

6.723 ± 0.054

2.227 ± 0.023

6.701 ± 0.051

5.481 ± 0.048

10.385 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.479 ± 0.024

4.18 ± 0.032

3.874 ± 0.033

5.496 ± 0.061

4.373 ± 0.041

5.3 ± 0.05

6.515 ± 0.044

7.146 ± 0.038

0.986 ± 0.022

3.459 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski