Borna disease virus 1 (BoDV-1)

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Bornaviridae; Orthobornavirus; Mammalian 1 orthobornavirus

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P0C798-2|PHOSP-2_BDV1 Isoform of P0C798 Isoform p16 of Phosphoprotein OS=Borna disease virus 1 OX=1714621 GN=P/X PE=1 SV=1
MM1 pKa = 7.76ISDD4 pKa = 4.12PDD6 pKa = 3.4QRR8 pKa = 11.84TGRR11 pKa = 11.84EE12 pKa = 3.69QLSNDD17 pKa = 3.48EE18 pKa = 4.78LIKK21 pKa = 11.06KK22 pKa = 9.74LVTEE26 pKa = 4.26LAEE29 pKa = 3.91NSMIEE34 pKa = 4.03AEE36 pKa = 4.42EE37 pKa = 4.07VRR39 pKa = 11.84GTLGDD44 pKa = 3.36ISARR48 pKa = 11.84IEE50 pKa = 3.93AGFEE54 pKa = 4.21SLSALQVEE62 pKa = 5.61TIQTAQRR69 pKa = 11.84CDD71 pKa = 3.27HH72 pKa = 6.83SDD74 pKa = 3.55SIRR77 pKa = 11.84ILGEE81 pKa = 3.61NIKK84 pKa = 10.55ILDD87 pKa = 3.75RR88 pKa = 11.84SMKK91 pKa = 10.56TMMEE95 pKa = 4.08TMKK98 pKa = 11.31LMMEE102 pKa = 4.38KK103 pKa = 10.34VDD105 pKa = 4.56LLYY108 pKa = 11.09ASTAVGTSAPMLPSHH123 pKa = 7.28PAPPRR128 pKa = 11.84IYY130 pKa = 9.39PQLPSAPTADD140 pKa = 3.5EE141 pKa = 3.79WDD143 pKa = 4.08IIPP146 pKa = 4.89

Molecular weight: 16.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P0C796|NCAP_BDV1 Nucleoprotein OS=Borna disease virus 1 OX=1714621 GN=N PE=1 SV=1
MM1 pKa = 7.3NSKK4 pKa = 10.31HH5 pKa = 6.92SYY7 pKa = 10.83VEE9 pKa = 4.3LKK11 pKa = 10.9DD12 pKa = 3.76KK13 pKa = 11.1VIVPGWPTLMLEE25 pKa = 3.83IDD27 pKa = 4.11FVGGTSRR34 pKa = 11.84NQFLNIPFLSVKK46 pKa = 10.28EE47 pKa = 3.94PLQLPRR53 pKa = 11.84EE54 pKa = 4.28KK55 pKa = 10.81KK56 pKa = 8.75LTDD59 pKa = 3.37YY60 pKa = 8.76FTIDD64 pKa = 3.51VEE66 pKa = 4.47PAGHH70 pKa = 6.21SLVNIYY76 pKa = 9.79FQIDD80 pKa = 3.82DD81 pKa = 4.34FLLLTLNSLSVYY93 pKa = 10.08KK94 pKa = 10.8DD95 pKa = 3.79PIRR98 pKa = 11.84KK99 pKa = 9.45YY100 pKa = 10.2MFLRR104 pKa = 11.84LNKK107 pKa = 9.04EE108 pKa = 3.99QSKK111 pKa = 10.0HH112 pKa = 6.0AINAAFNVFSYY123 pKa = 10.67RR124 pKa = 11.84LRR126 pKa = 11.84NIGVGPLGPDD136 pKa = 3.05IRR138 pKa = 11.84SSGPP142 pKa = 3.07

Molecular weight: 16.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

2

7

3430

142

1711

490.0

54.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.026 ± 0.451

2.041 ± 0.332

4.985 ± 0.281

5.569 ± 0.546

3.878 ± 0.341

5.802 ± 0.358

2.42 ± 0.148

6.006 ± 0.208

4.373 ± 0.331

11.37 ± 0.775

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.595 ± 0.357

3.003 ± 0.479

5.656 ± 0.309

3.615 ± 0.109

6.006 ± 0.211

8.338 ± 0.257

6.239 ± 0.573

6.356 ± 0.661

1.312 ± 0.181

3.411 ± 0.293
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski