Bean yellow disorder virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Crinivirus

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B2BZW8|B2BZW8_9CLOS p60 OS=Bean yellow disorder virus OX=267970 PE=4 SV=1
MM1 pKa = 7.36GLKK4 pKa = 9.87IVIYY8 pKa = 8.2FHH10 pKa = 6.63NCGLIIYY17 pKa = 8.19YY18 pKa = 10.41CADD21 pKa = 3.17NRR23 pKa = 11.84DD24 pKa = 3.51FLGDD28 pKa = 3.54FEE30 pKa = 4.79VVRR33 pKa = 11.84TEE35 pKa = 4.53DD36 pKa = 3.66FSEE39 pKa = 4.55LSDD42 pKa = 4.23IITNFPFVKK51 pKa = 10.13TSWW54 pKa = 3.13

Molecular weight: 6.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B2BZW4|B2BZW4_9CLOS p6 OS=Bean yellow disorder virus OX=267970 PE=4 SV=1
MM1 pKa = 7.56GINYY5 pKa = 9.19GFLSHH10 pKa = 6.96ACNRR14 pKa = 11.84NGILYY19 pKa = 8.92NNSMCVVDD27 pKa = 6.48IIGFWLTVCVLIIILIYY44 pKa = 10.81LLFICFVKK52 pKa = 10.14FVIKK56 pKa = 10.52II57 pKa = 3.59

Molecular weight: 6.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13

0

13

5080

48

2021

390.8

44.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.878 ± 0.252

2.087 ± 0.239

5.965 ± 0.282

5.591 ± 0.483

5.866 ± 0.608

5.039 ± 0.293

2.146 ± 0.295

6.811 ± 0.289

7.776 ± 0.453

9.528 ± 0.377

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.697 ± 0.27

7.185 ± 0.378

3.406 ± 0.25

2.5 ± 0.214

4.862 ± 0.4

7.52 ± 0.399

5.02 ± 0.242

6.831 ± 0.626

0.807 ± 0.105

4.488 ± 0.221
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski