Dialister succinatiphilus YIT 11850

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Negativicutes; Veillonellales; Veillonellaceae; Dialister; Dialister succinatiphilus

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2140 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H1D2W2|H1D2W2_9FIRM Uncharacterized protein OS=Dialister succinatiphilus YIT 11850 OX=742743 GN=HMPREF9453_01950 PE=4 SV=1
MM1 pKa = 7.6KK2 pKa = 10.24KK3 pKa = 10.19YY4 pKa = 9.87ICKK7 pKa = 9.17ICGWIYY13 pKa = 11.18DD14 pKa = 4.17EE15 pKa = 5.52AQGDD19 pKa = 4.38PDD21 pKa = 3.97NGIAPGTKK29 pKa = 9.9FEE31 pKa = 5.53DD32 pKa = 3.69LPADD36 pKa = 4.59YY37 pKa = 10.21ICPMCGAGKK46 pKa = 10.3DD47 pKa = 3.56EE48 pKa = 4.27FEE50 pKa = 4.51EE51 pKa = 4.83YY52 pKa = 10.52EE53 pKa = 4.25GG54 pKa = 4.34

Molecular weight: 6.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H1D358|H1D358_9FIRM Ribosomal RNA small subunit methyltransferase G OS=Dialister succinatiphilus YIT 11850 OX=742743 GN=rsmG PE=3 SV=1
MM1 pKa = 7.7AKK3 pKa = 7.99MTFQPNNHH11 pKa = 5.63WRR13 pKa = 11.84KK14 pKa = 6.87QTHH17 pKa = 5.61GFRR20 pKa = 11.84ARR22 pKa = 11.84MKK24 pKa = 8.64TKK26 pKa = 10.33AGRR29 pKa = 11.84IVLKK33 pKa = 10.36RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.89GRR40 pKa = 11.84KK41 pKa = 8.67VLSAA45 pKa = 4.05

Molecular weight: 5.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2140

0

2140

646481

20

2249

302.1

33.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.447 ± 0.054

1.204 ± 0.022

5.697 ± 0.047

6.824 ± 0.052

4.15 ± 0.04

7.731 ± 0.054

2.307 ± 0.023

6.526 ± 0.039

6.613 ± 0.047

9.361 ± 0.071

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.226 ± 0.026

3.537 ± 0.044

3.974 ± 0.031

2.795 ± 0.031

5.185 ± 0.048

5.948 ± 0.043

5.149 ± 0.041

6.704 ± 0.045

1.056 ± 0.019

3.568 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski